class edfimage(fabioimage):
""" Read and try to write the ESRF edf data format """
def __init__(self, data=None, header=None, header_keys=None, frames=None):
self.currentframe = 0
self.filesize = None
try:
dim = len(data.shape)
except Exception, error: #IGNORE:W0703
logger.debug(
"Data don't look like a numpy array (%s), resetting all!!" %
error)
data = None
dim = 0
fabioimage.__init__(self, data, header)
if dim == 2:
fabioimage.__init__(self, data, header)
elif dim == 1:
data.shape = (0, len(data))
fabioimage.__init__(self, data, header)
elif dim == 3:
fabioimage.__init__(self, data[0, :, :], header)
elif dim == 4:
fabioimage.__init__(self, data[0, 0, :, :], header)
elif dim == 5:
fabioimage.__init__(self, data[0, 0, 0, :, :], header)
if frames is None:
frame = Frame(data=self.data,
header=self.header,
header_keys=header_keys,
number=self.currentframe)
self.__frames = [frame]
else:
self.__frames = frames
def __init__(self, data=None , header=None, header_keys=None):
self.currentframe = 0
fabioimage.__init__(self, data, header)
frame = Frame(data=data, header=header,
header_keys=header_keys ,
number=self.currentframe)
self.frames = [frame]
def __init__(self, data=None, header=None, header_keys=None):
self.currentframe = 0
fabioimage.__init__(self, data, header)
frame = Frame(data=data,
header=header,
header_keys=header_keys,
number=self.currentframe)
self.frames = [frame]
def __init__(self, *arg, **kwargs):
fabioimage.__init__(self, *arg, **kwargs)
fun = getattr(fabioimage, '__init__', lambda x: None)
fun(self)
self.data = None
self.header = {'Subformat': 'P5'}
self.dim1 = self.dim2 = 0
self.m = self.maxval = self.stddev = self.minval = None
self.header_keys = self.header.keys()
self.bytecode = None
def __init__(self, *arg, **kwargs):
fabioimage.__init__(self, *arg, **kwargs)
fun = getattr(fabioimage, '__init__', lambda x: None)
fun(self)
self.data = None
self.header = {'Subformat':'P5'}
self.dim1 = self.dim2 = 0
self.m = self.maxval = self.stddev = self.minval = None
self.header_keys = self.header.keys()
self.bytecode = None
def __init__(self, data=None , header=None, header_keys=None, frames=None):
self.currentframe = 0
self.filesize = None
try:
dim = len(data.shape)
except Exception, error: #IGNORE:W0703
logger.debug("Data don't look like a numpy array (%s), resetting all!!" % error)
data = None
dim = 0
fabioimage.__init__(self, data, header)
def __init__(self, data=None , header=None, header_keys=None, frames=None):
self.currentframe = 0
self.filesize = None
try:
dim = len(data.shape)
except Exception, error: #IGNORE:W0703
logger.debug("Data don't look like a numpy array (%s), resetting all!!" % error)
data = None
dim = 0
fabioimage.__init__(self, data, header)
def __init__(self, fname=None):
"""
Constructor of the class CIF Binary File reader.
@param fname: the name of the file to open
@type fname: string
"""
fabioimage.__init__(self)
self.cif = CIF()
if fname is not None: #load the file)
self.read(fname)
def __init__(self, *arg, **kwargs):
"""
Generic constructor
"""
fabioimage.__init__(self, *arg, **kwargs)
self.data = None
self.header = {}
self.dim1 = self.dim2 = 0
self.m = self.maxval = self.stddev = self.minval = None
self.header_keys = self.header.keys()
self.bytecode = None
def __init__(self, data=None , header=None, fname=None):
"""
Constructor of the class CIF Binary File reader.
@param _strFilename: the name of the file to open
@type _strFilename: string
"""
fabioimage.__init__(self, data, header)
self.cif = CIF()
if fname is not None: #load the file)
self.read(fname)
def __init__(self, *arg, **kwargs):
"""
Generic constructor
"""
fabioimage.__init__(self, *arg, **kwargs)
self.data = None
self.header = {}
self.dim1 = self.dim2 = 0
self.m = self.maxval = self.stddev = self.minval = None
self.header_keys = self.header.keys()
self.bytecode = 'uint16' #same for all RAXIS images AFAICT
self.endianness = '>' #this may be tested for.
def __init__(self, *args, **kwargs):
fabioimage.__init__(self, *args, **kwargs)
self.encoded_datatype = None
self.no_data_elements = None
self.grouptag_is_sorted = None
self.grouptag_is_open = None
self.tag_encoded_type = None
self.tag_data_type = None
self.tag_is_data = None
self.grouptag_no_tags = None
self.bytes_in_file = None
self.tag_label_length = None
self.go_on = None
def __init__(self, *args, **kwargs):
fabioimage.__init__(self, *args, **kwargs)
self.encoded_datatype = None
self.no_data_elements = None
self.grouptag_is_sorted = None
self.grouptag_is_open = None
self.tag_encoded_type = None
self.tag_data_type = None
self.tag_is_data = None
self.grouptag_no_tags = None
self.bytes_in_file = None
self.tag_label_length = None
self.go_on = None
def __init__(self, data=None, header=None, fname=None):
"""
Constructor of the class XSDataImage.
@param data: input data
@type data: numpy.ndarray
@param header: input metadata
@type header: dict
@param fname: the name of the file to open
@type fname: string
"""
fabioimage.__init__(self, data=data, header=header)
self.dims = []
self.coding = None
if fname is not None:
self.filename = fname
self.read(fname)
def __init__(self, data=None, header=None, fname=None):
"""
Constructor of the class XSDataImage.
@param data: input data
@type data: numpy.ndarray
@param header: input metadata
@type header: dict
@param fname: the name of the file to open
@type fname: string
"""
fabioimage.__init__(self, data=data, header=header)
self.dims = []
self.coding = None
if fname is not None:
self.filename = fname
self.read(fname)
def __init__(self, data=None, header=None, fname=None):
"""
Constructor of the class XSDataImage.
@param _strFilename: the name of the file to open
@type _strFilename: string
"""
fabioimage.__init__(self, data=data, header=header)
self.dims = []
self.size = None
self.coding = None
self.dtype = None
self.rawData = None
self.md5 = None
if fname is not None:
self.filename = fname
self.read(fname)
def __init__(self, data=None, header=None, fname=None):
"""
Constructor of the class XSDataImage.
@param _strFilename: the name of the file to open
@type _strFilename: string
"""
fabioimage.__init__(self, data=data, header=header)
self.dims = []
self.size = None
self.coding = None
self.dtype = None
self.rawData = None
self.md5 = None
if fname is not None:
self.filename = fname
self.read(fname)
def __init__(self, *arg, **kwargs):
"""
Generic constructor
"""
if not h5py:
raise RuntimeError("fabio.hdf5image cannot be used without h5py. Please install h5py and restart")
fabioimage.__init__(self, *arg, **kwargs)
self.data = None
self.header = {}
self.dim1 = self.dim2 = 0
self.m = self.maxval = self.stddev = self.minval = None
self.header_keys = self.header.keys()
self.bytecode = None
self.hdf5 = None
self.hdf5_location = None
self.nframes = None
def __init__(self, *args, **kwds):
""" Tifimage constructor adds an nbits member attribute """
self.nbits = None
fabioimage.__init__(self, *args, **kwds)
self.lib = None
def __init__(self, *args, **kwargs):
fabioimage.__init__(self, *args, **kwargs)
self.numhigh = None
self.numpixels = None
def __init__(self, *args, **kwds):
""" Tifimage constructor adds an nbits member attribute """
self.nbits = None
fabioimage.__init__(self, *args, **kwds)
def __init__(self, *args, **kwargs):
fabioimage.__init__(self, *args, **kwargs)
def __init__(self, *args, **kwargs):
fabioimage.__init__(self, *args, **kwargs)
self.numhigh = None
self.numpixels = None
def __init__(self, data=None , header=None):
fabioimage.__init__(self, data, header)
self.__bpp_file = None
self.version = 86
self.__headerstring__ = ""
def __init__(self, *args, **kwargs):
fabioimage.__init__(self, *args, **kwargs)
