def test_1_build_ref(self):
""" Build bloom filters out of the reference genomes directory.
"""
for ref in os.listdir(self.reference):
org = os.path.join(self.reference, ref, "seq", ref+".fa")
bf = os.path.join(self.bloom_dir, os.path.splitext(ref)[0]+".bloom")
print(org, bf)
if not os.path.exists(bf):
facs.build(org, bf)
def test_1_build_ref(self):
""" Build bloom filters out of the reference genomes directory.
"""
for ref in os.listdir(self.reference):
facs.build(os.path.join(self.reference, ref),
os.path.join(self.bloom_dir, os.path.splitext(ref)[0]+".bloom"))