def test_count(self):
with TmpDir() as dir_:
filename = os.path.join(dir_, self.name)
df = DataFrame(self.data, columns=self.channels)
df.to_fcs(filename)
fcs = Fcs.from_file(filename)
assert fcs.count == len(self.data)
def test_data(self):
with TmpDir() as dir_:
filename = os.path.join(dir_, self.name)
df = DataFrame(self.data, columns=self.channels)
df.to_fcs(filename)
fcs = Fcs.from_file(filename)
assert np.array_equal(fcs.values, self.data)
def test_from_fcs(self):
with TmpDir() as dir_:
filename = os.path.join(dir_, "test.fcs")
cols = pd.MultiIndex.from_tuples(
list(zip(self.channels, self.long_channels)),
names=["short", "long"],
)
df = DataFrame(self.data, columns=cols)
df.to_fcs(filename)
self.s3.upload_file(filename, self.bucket_name, "test.fcs")
parse_func = create_open_func(S3ReadBuffer, bucket=self.bucket_name)
with parse_func("test.fcs") as fp:
fcs = Fcs.from_file(fp)
assert fcs.short_channels == self.channels
assert fcs.long_channels == self.long_channels
assert fcs.count == len(self.data)
assert np.array_equal(fcs.values, self.data)