def launch_single(in_directory, out_directory, job_name, logs=logs, nodes=2):
js = JobScheduler(pycmd=PYCMD,
jobName=job_name,
logDir=logs,
nodes=nodes,
jobType='single',
jobArray=in_directory,
options=[in_directory, out_directory])
js.run(test=False)
def launch(methods):
"""
This part launches the jobs that run in main
"""
cwd = os.getcwd()
script = "routines.py"
js = JobScheduler(cwd + "/" + script, logDir = logs,
jobName = "r0046_", partition = 'exfel', nodes = 4, jobType = 'array',
jobArray = methods)
js.run(test = False)
def launch(mode = 'pulse'):
"""
This part launches the jobs that run in main
"""
cwd = getcwd()
script = "mirror_angle_optimisation.py"
js = JobScheduler(cwd + "/" + script, logDir = logs,
jobName = "mirror_optimisation", partition = 'exfel', nodes = 1, jobType = 'array',
jobArray = np.arange(3,15,0.5))
js.run(test = False)
def launch():
"""
This part launches the jobs that run in main
"""
cwd = os.getcwd()
script = os.path.basename(__file__)
js = JobScheduler(cwd + "/" + script, logDir = logs,
jobName = "extract_intensity_", partition = 'exfel', nodes = 4, jobType = 'array',
jobArray = os.listdir(indir))
js.run(test = False)
def launch_batch(in_directory, out_directory,
job_name,
logs = logs,
nodes = 4):
js = JobScheduler(pycmd = PYCMD,
jobName = job_name,
logDir = logs,
nodes = nodes,
jobType = 'array',
jobArray = os.listdir(in_directory),
options = out_directory)
js.run(test = False)
def propagation_batch_launcher(input_directory, sdir, focus, analysis = False, crop = None, append = None, descriptor = "", VERBOSE = True):
"""
This part launches the jobs that run in main
"""
wfr_directory = input_directory
mkdir_p(sdir)
cwd = os.getcwd()
script = __file__
filename = script
function = inspect.currentframe().f_code.co_name
js = JobScheduler(cwd + "/" + script, logDir = logs + "/",
jobName = "NVE_4.96keV", partition = 'exfel', nodes = 2, jobType = 'array',
jobArray = wfr_directory, options = [sdir, focus, analysis, crop, append, descriptor])
js.run(test = False)
def get_intensity_autocorrelation_ensemble(
array_dir=dCache + "whitefield_data/cropped_intensity_r0047.npy",
method=get_normalised_difference):
"""
This part launches the jobs that run in main
"""
arr = np.load(array_dir)
cwd = os.getcwd()
script = "intensity_correlations.py"
js = JobScheduler(cwd + "/" + script,
logDir=logs,
jobName="autocorrelation_analysis_",
partition='exfel',
nodes=1,
jobType='array',
jobArray=range(arr.shape[-1]))
js.run(test=False)