def _analyze(recording):
# We pass a tuple because SQLAlchemy objects are not fully process-safe.
# They can be pickled and unpickled, but they won't be bound to a Session
# anymore. This means they can't refresh their attributes, which is
# something they try to do after a commit() from inside the main process.
recording_id, sonogram_url_small = recording
try:
# Create one fetcher per process.
global _sonogram_fetcher # pylint: disable=global-statement
if not _sonogram_fetcher:
_sonogram_fetcher = fetcher.Fetcher(cache_group='xc_sonograms_small', pool_size=1)
sonogram = None
try:
sonogram = _sonogram_fetcher.fetch_cached(sonogram_url_small)
except fetcher.FetchError as ex:
logging.warning(f'Sonogram for recording {recording_id} could not be fetched', exc_info=True)
sonogram_quality = -999999
if sonogram:
sonogram_quality = analysis.sonogram_quality(recording_id, sonogram)
return (recording_id, sonogram_quality)
except Exception as ex:
# Re-raise as something that's guaranteed to be pickleable.
logging.error('Exception during analysis', exc_info=True)
raise RuntimeError(f'Exception during analysis: {ex}')
def _process_image(image):
'''
Entry point for parallel processing.
'''
global _fetcher # pylint: disable=global-statement
if not _fetcher:
_fetcher = fetcher.Fetcher('wp_images', pool_size=1)
full_output_file_name = os.path.join(_args.image_output_dir,
image.output_file_name)
if os.path.exists(full_output_file_name) and not _args.recreate_images:
return image.output_file_name
image_data = _fetcher.fetch_cached(image.image_file_url)
pil_image = PIL.Image.open(io.BytesIO(image_data))
if pil_image.width > _args.image_size or pil_image.height > _args.image_size:
if pil_image.width >= pil_image.height:
output_width = _args.image_size
output_height = round(output_width / pil_image.width *
pil_image.height)
else:
output_height = _args.image_size
output_width = round(output_height / pil_image.height *
pil_image.width)
pil_image = pil_image.resize((output_width, output_height),
resample=PIL.Image.LANCZOS)
pil_image.save(full_output_file_name,
format='WebP',
quality=_args.image_quality)
return image.output_file_name
def __init__(self, weekfile, weeknumber):
self.weekreview = fetcher.Fetcher(weekfile, end_ind="tag")
self.weekreview.read_file()
self.weektable = tablemd.tablemd(self.weekreview.content_data)
weektitle = [self.weektable.readcell(0,2*i+1).encode('ascii','ignore')
for i in range(3)]
weeknumbers = [int(filter(str.isdigit,strt))
for strt in weektitle]
self.week_index = 1 + weeknumbers.index(weeknumber) * 2
def FetchAsyncWithAuth(*args, **kwargs):
credential = model.GetOAuth2Credential('github')
if credential:
url_auth_suffix = ('?client_id={0}&client_secret={1}'
.format(credential.client_id,
credential.client_secret))
else:
url_auth_suffix = ''
return fetcher.Fetcher(*args, url_auth_suffix=url_auth_suffix, **kwargs)
def PopulateRepos(self):
shared.EnsureRunningInTask() # gives us automatic retries
baseurl = self.repo_collection.key.id()
fetched = fetcher.Fetcher(baseurl, follow_redirects=True)
page = fetched.content
candidate_repos = self._GetChildPaths(page)
fetches = []
# we found a project in the root directory
if 'app.yaml' in candidate_repos:
candidate_repos.insert(0, '')
if common.IsDevMode():
# fetch fewer repos during development
candidate_repos = candidate_repos[:1]
for c in candidate_repos:
if c and not c.endswith('/'):
continue
project_url = '{0}{1}'.format(baseurl, c)
app_yaml_url = '{0}app.yaml'.format(project_url)
fetched = fetcher.Fetcher(app_yaml_url, follow_redirects=True)
fetches.append((c, project_url, app_yaml_url, fetched))
repos = []
for c, project_url, app_yaml_url, fetched in fetches:
try:
content = fetched.content
shared.i('found app.yaml: {}'.format(app_yaml_url))
name = c.rstrip('/') or project_url
description = 'Sample code from {0}'.format(project_url)
model.CreateRepoAsync(repo_url=project_url,
html_url=project_url,
name=name,
description=description,
open_files=[])
except urlfetch_errors.Error:
exc_info = sys.exc_info()
formatted_exception = traceback.format_exception(
exc_info[0], exc_info[1], exc_info[2])
shared.w('skipping {0}'.format(project_url))
for line in [line for line in formatted_exception if line]:
shared.w(line)
async def main(delay_rate, server_upper_limit):
server_upper_limit = asyncio.Semaphore(server_upper_limit)
obj = fetcher.Fetcher(delay_rate=delay_rate,
server_upper_limit=server_upper_limit)
resultDataSet = await obj.main()
resultDataSet = {"database": resultDataSet}
with open('./data.json', 'w') as json_file:
json_file.write(json.dumps(resultDataSet))
print("The entire data has been stored into the data.json file")
time.sleep(0.1)
def crawl(self, config):
print 'start crawling'
#实例化多线程抓取模块，指定3个线程
f = fetcher.Fetcher(config)
f.start()
while f.get_running_count() > 0:
print '------------ running threads : %s ------------' % f.get_running_count(
)
time.sleep(5)
f.printFinishLog()
def __init__(self):
self.working = True
self.threads = []
self.log = log.Log(self)
self.fetcher = fetcher.Fetcher(self)
self.process = process.Process(self)
self.db = db.Db(self)
self.fetcher.start()
self.process.start()
self.db.start()
def test_login_failure(self):
cookieFile = tempfile.mkstemp()[1]
try:
os.remove(cookieFile)
get_HTML = fetcher.Fetcher(lambda x: sys.stdout.write(x + '\n'),
lambda x: cookieFile).getHTML
user = User(get_HTML)
userID, real_name = user.login(self.username,
self.password + "not")
self.assertIsNone(userID)
self.assertIsNone(real_name)
finally:
os.remove(cookieFile)
def test_login_success(self):
cookieFile = tempfile.mkstemp()[1]
try:
os.remove(cookieFile)
get_HTML = fetcher.Fetcher(lambda x: sys.stdout.write(x + '\n'),
lambda x: cookieFile).getHTML
user = User(get_HTML)
# Weak assertions but don't want to tie to a particular user.
userID, real_name = user.login(self.username, self.password)
# Weak assertions but don't want to tie to a particular user.
self.assertIsNotNone(userID)
self.assertIsNotNone(real_name)
finally:
os.remove(cookieFile)
def add_files(dirname):
url = os.path.join(repo_url, dirname)
fetched = fetcher.Fetcher(url, follow_redirects=True)
page = fetched.content
paths = self._GetChildPaths(page)
shared.i('{0} -> {1}', url, paths)
if not paths:
shared.i('- {0}'.format(dirname))
tree.SetFile(dirname, page)
for path in paths:
if common.GetExtension(path) in settings.SKIP_EXTENSIONS:
continue
relpath = os.path.join(dirname, path)
add_files(relpath)
def get_wiktionary_fields(entry, language):
"""
Fetch Wiktionary info about the work and update fields
"""
myFetcher = fetcher.Fetcher()
fetchedPage = myFetcher.fetch(entry)
if fetchedPage:
myParser = parser.Parser()
myParser.setLanguage(language)
myParser.setWordName(entry)
extractedWord = myParser.extractData(fetchedPage)
return extractedWord
else:
return False
def scan(settings: Settings):
logger.warning("Scan houses from web site")
storage: fetcher.HouseStore = store.LiteHouseStore(
settings.storage["sqlite"]["path"])
notifier: fetcher.Notifier
if settings.core["should_notify"]:
notifier = notify.IftttNotifier(
logger,
fetcher.get_591_url,
settings.notify["ifttt"]["webhook_token"],
settings.notify["ifttt"]["event_name"],
)
else:
notifier = notify.EmptyNotifier()
agent = fetcher.Fetcher(logger, settings.core["page_delay"])
scanner = fetcher.Scanner(logger, storage, notifier, agent,
settings.core["batch_delay"])
scanner.scan_house(settings.query)
def files():
return fetcher.Fetcher(datadir).fetch_files(
'benchdens', 'e0(2|4|6|8)n((100))\\.00(0|1|2)\\.in')
def fileshighhk90():
return fetcher.Fetcher(datadir).fetch_files(
'holmefinal', 'n90d(6|8)0p(\\d\\d)\\.00(0|1|2|3|4)\\.in')
def filesn90d60fixedpart():
return fetcher.Fetcher(datadir).fetch_files(
'fixedpart', 'p(\d)n90d0(6)\\.00(0|1)\\.in')
def fileshigh90():
return fetcher.Fetcher(datadir).fetch_files(
'benchdens', 'e0(6|8)n((90))\\.00(0|1|2|3|4)\\.in')
def fileshigh():
return fetcher.Fetcher(datadir).fetch_files(
'benchdens', 'e0(6|8)n((100))\\.00(3|4)\\.in')
#
# Fetch full images from the library for a random subset of records.
from optparse import OptionParser
import fetcher
import random
import record
if __name__ == '__main__':
parser = OptionParser()
parser.add_option("-n", "--num", dest="num",
default=100,
help="How many images to fetch.")
parser.add_option("", "--seed", dest="seed", default=12345,
help="Random number seed.")
parser.add_option("-c", "--output_dir", dest="cache_dir", default="images",
help="Images destination dir")
parser.add_option("-s", "--secs", dest="secs", default=5,
help="Number of seconds to wait between fetches.")
(options, args) = parser.parse_args()
rs = record.AllRecords()
rand = random.Random(options.seed)
rand.shuffle(rs)
f = fetcher.Fetcher(options.cache_dir, int(options.secs))
for i, r in enumerate(rs[0:int(options.num)]):
print "%03d Fetching %s" % (i, r.photo_url)
f.Fetch(r.photo_url)
def __init__(self):
self.database = database.Database()
self.fetcher = fetcher.Fetcher()
current_version = self.fetcher.version()
if current_version > self.database.version():
self.update_database(str(current_version))
def filesp1():
return fetcher.Fetcher(datadir).fetch_files(
'singlepart', 'e0(2|4|6|8)n((100))p1\\.00(0|1|2)\\.in')
# Example for Fetcher.cpp
import cv2
import fetcher
myFetcher = fetcher.Fetcher()
ptNumber = 0
def onMouse(event, x, y, flags, param):
global ptNumber
if event == cv2.EVENT_LBUTTONUP:
myFetcher.setPt(x, y, ptNumber)
ptNumber = ptNumber + 1
cv2.namedWindow("Video Captured")
cv2.setMouseCallback("Video Captured", onMouse)
cap = cv2.VideoCapture(0)
while (True):
# Capture frame-by-frame
ret, frame = cap.read()
key = cv2.waitKey(1)
# Our operations on the frame come here
fileName = myFetcher.calibrate(frame, 5, 200, key)
#!/usr/bin/python
import record
import fetcher
import os
rs = record.AllRecords()
f = fetcher.Fetcher('images', 0)
rs = [r for r in rs if (r.photo_url and f.InCache(r.photo_url))]
for idx, r in enumerate(rs):
in_image = f.CacheFile(r.photo_url)
out_image = 'thumbnails/%s.jpg' % r.photo_id()
cmd = 'convert %s -resize 200x200 %s' % (in_image, out_image)
print '%05d %s' % (idx, cmd)
os.system(cmd)
def fileshk():
return fetcher.Fetcher(datadir).fetch_files(
'holme', 'n100d0(1|2|3|4)\\.00(3|4)\\.in')
def __init__(self, cap, key=1):
self.cap = cap
self.key = key
self.patch = None
self.myFetcher = fetcher.Fetcher()
signal.signal(signal.SIGTSTP, self.handler)
def filesvlow():
return fetcher.Fetcher(datadir).fetch_files(
'benchdens', 'e0(2)n((100))\\.00(3|4)\\.in')
consumer_key = os.getenv("CONSUMER_KEY", None)
consumer_secret = os.getenv("CONSUMER_SECRET", None)
access_token = os.getenv("ACCESS_TOKEN", None)
access_token_secret = os.getenv("ACCESS_TOKEN_SECRET", None)
if (
consumer_key is None
or consumer_secret is None
or access_token is None
or access_token_secret is None
):
print("No credentials provided")
sys.exit(1)
fetcher = fetcher.Fetcher(
consumer_key, consumer_secret, access_token, access_token_secret
)
app = flask.Flask(__name__)
@app.route("/", methods=["GET", "POST"])
def handler():
if flask.request.method == "GET":
return {"status": "ok"}, 200
else:
if flask.request.json is None:
app.logger.error("POST req without req body received")
return {"status": "error"}, 500
else:
try:
ids = flask.request.json["ids"]
#Parse the command line arguments, and load the config file.
args = get_args()
config = configreader.Configurator(args.settings)
cfg, notices = config.read_settings('spatial')
#cfg, notices = configreader.read_settings(args.settings)
today = datetime.date.today()
if args.weekly:
searchdate = today + datetime.timedelta(days=-7)
dbname = 'w_' + cfg['localdb']
else:
searchdate = today
dbname = cfg['localdb']
#test date please ignore.
#searchdate = datetime.date(2014, 11, 8)
print 'Fetching from {0} to now...'.format(searchdate.isoformat())
lamagetter = fetcher.Fetcher(cfg['connection'])
localdb = LocalStore(dbname)
for notice in notices:
try:
rows = lamagetter.fetch(notice['sql'].format(searchdate))
except fetcher.FetcherError as e:
print ' - Error accessing DB: {0}'.format(e.message)
sys.exit(1)
localdb.save_data(notice['table'], rows, notice['uidfield'])
print ' - {0} rows saved to table {1}'.format(len(rows), notice['table'])
localdb.close_db()
print 'NoticeLAMA Complete!'
def trim_recording(recording,
skip_if_exists=True,
skip_write=False,
debug_otsu_threshold=False,
debug_utterances=False):
'''
Trims the given recording and stores it to a file.
Returns the file name, or None if this recording is permanently untrimmable for some reason.
'''
global _fetcher # pylint: disable=global-statement
if not _fetcher:
_fetcher = fetcher.Fetcher('recordings', pool_size=1)
output_file_name = trimmed_recording_file_name(recording)
if skip_if_exists and os.path.exists(output_file_name):
return output_file_name
try:
data = _fetcher.fetch_cached(recording.audio_url)
except fetcher.FetchError as ex:
logging.error(f'Error fetching {recording.recording_id}: {ex}')
return None
try:
sound = pydub.AudioSegment.from_file(io.BytesIO(data), 'mp3')
except Exception as ex: # pylint: disable=broad-except
# These errors can get extremely long.
logging.error(
f'Failed to decode audio file for {recording.url} '
f'(cache file {_fetcher.cache_file_name(recording.audio_url)}): {str(ex)[:5000]}'
)
return None
# pydub does everything in milliseconds, and so do we, unless otherwise
# specified.
sound = sound[:1000 * _AUDIO_SCAN_DURATION]
sound = sound.set_channels(1)
sound = sound.set_frame_rate(_AUDIO_SAMPLE_RATE)
min_duration = round(1000 * _MIN_AUDIO_DURATION)
max_duration = round(1000 * _MAX_AUDIO_DURATION)
padding_duration = round(1000 * _AUDIO_PADDING_DURATION)
fade_duration = round(1000 * _AUDIO_FADE_DURATION)
# Find longest utterance, the end of which is a good place to cut off the
# sample.
utterances = list(
_detect_utterances(sound, debug_otsu_threshold=debug_otsu_threshold))
# This should not happen, because the threshold is such that there is
# always something above it.
assert utterances, f'No utterances detected in {recording.url}'
# Exhaustively search all possible ranges of consecutive utterances that we
# want to include, and score them by desirability.
candidates = []
# We try to start only from the first three utterances, because recordists
# tend to trim the audio such that it starts on a relevant bit. This seems
# to help to avoid including (unlabelled) background species and other
# noise.
for i, start_utterance in enumerate(utterances[:3]):
start_ms = max(0, start_utterance[0] - padding_duration)
utterance_duration = 0
for end_utterance in utterances[i:]:
utterance_duration += end_utterance[1] - end_utterance[0]
end_ms = min(len(sound), end_utterance[1] + padding_duration)
total_duration = end_ms - start_ms
# First criterion: it must be long enough. More negative is more bad.
longness_score = min(0.0, total_duration - min_duration)
# Second criterion: it must not be too long. More negative is more bad.
shortness_score = min(0.0, max_duration - total_duration)
# Third criterion: it must have a good utterance to silence ratio.
utterance_score = utterance_duration / total_duration
score_vector = (longness_score, shortness_score, utterance_score)
candidates.append((score_vector, (start_ms, end_ms)))
_, (start_ms, end_ms) = max(candidates)
duration_ms = end_ms - start_ms
# Never go above the maximum duration.
if duration_ms > max_duration:
end_ms = start_ms + max_duration
# Never go below the minimum duration.
if duration_ms < min_duration:
# Try adding half of the missing duration before and half after.
margin_ms = (min_duration - duration_ms + 1) // 2
start_ms -= margin_ms
end_ms += margin_ms
if start_ms < 0:
# Running up to the start of the sound.
start_ms = 0
end_ms = min(len(sound), start_ms + min_duration)
if end_ms > len(sound):
# Running up to the end of the sound.
end_ms = len(sound)
start_ms = max(0, end_ms - min_duration)
sound = sound[start_ms:end_ms]
sound = sound.fade_in(fade_duration).fade_out(fade_duration)
sound = pydub.effects.normalize(sound)
if debug_utterances:
import subprocess # pylint: disable=import-outside-toplevel
import tempfile # pylint: disable=import-outside-toplevel
from PIL import Image, ImageDraw # pylint: disable=import-outside-toplevel
sonogram_data = _fetcher.fetch_cached(recording.sonogram_url_full)
sonogram = Image.open(io.BytesIO(sonogram_data))
draw = ImageDraw.Draw(sonogram, mode='RGBA')
def highlight(start_ms, end_ms, color):
# Fixed parameters for full sonograms drawn by xeno-canto.
# Visual left margin is at 62px, but it seems the audio starts
# 4px later.
margin_left = 66
px_per_ms = 75 / 1000
left_px = margin_left + px_per_ms * start_ms
right_px = margin_left + px_per_ms * end_ms
draw.rectangle(((left_px, 0), (right_px, sonogram.height)),
fill=color)
highlight(start_ms, end_ms, (128, 128, 255, 32))
for (s, e) in utterances:
highlight(s, e, (128, 255, 128, 64))
with tempfile.NamedTemporaryFile() as f:
sonogram.save(f, format='png')
subprocess.run(['eog', f.name], check=False)
if skip_write:
return None
tmp_file_name = output_file_name + '.tmp'
sound.export(tmp_file_name,
format='ogg',
parameters=['-q:a', str(_AUDIO_QUALITY)])
os.rename(tmp_file_name, output_file_name)
return output_file_name
#!/usr/bin/env python3
"""Download all the images referenced from an images.ndjson file.
Usage: ./fetch_images.py images.ndjson
"""
import fileinput
import json
import os
import requests
import fetcher
if __name__ == '__main__':
f = fetcher.Fetcher()
os.makedirs('images', exist_ok=True)
for i, line in enumerate(fileinput.input()):
image = json.loads(line)
url = image.get('imageLink')
if not url:
continue
path = os.path.join('images', os.path.basename(url))
if os.path.exists(path):
continue
try:
content = f.fetch_url(url)
except requests.exceptions.HTTPError as e:
if e.response.status_code == 404:
continue # sadly, some images are just missing