def testrun(self):
# self.testtable()
print ('test 1')
d = {'a': 1, 'b': 1, 'c':1, 'd':7}
ind = dictinvert(d)
ind2 = dictinvert(ind)
print (d)
print (ind)
print (ind2)
d = {1: ['a', 'b', 'b'], 7: ['d']}
ind = dictinvert(d)
ind2 = dictinvert(ind)
print (d)
print (ind)
print (ind2)
d = {1: ['ahh', 'bjjj', 'bjjj'], 7: ['oood']}
ind = dictinvert(d)
ind2 = dictinvert(ind)
print (d)
print (ind)
print (ind2)
a = ['ver-1.3.12', 'ver-1.3.3', 'ver-1.2.5', 'ver-1.2.15', 'ver-1.2.3', 'ver-1.2.1']
b = natsorted(a)
print (a,'\n',b)
tulis=[('yellow', 1), ('blue', 2), ('yellow', 3), ('blue', 4), ('red', 1)]
d=keylis2dic(tulis)
print (d['blue'])
self.assertEqual (list(d.items()),[('blue', [2, 4]), ('red', [1]), ('yellow', [1, 3])])
confirmed = filterconsecutive(mtchlis = [0,1,2,5,6,7,10,12,13])
self.assertEqual(confirmed,[(0,2),(5,7),(10,10),(12,13)])
print (renamefilename(os.path.join('','oop.GRF.fastaR'),'hih','iii'))
print(renamefilename('/llll/kllklkkl/annotationfilename.txt', prefix='txt'))
import logging
setup_logging()
logger = logging.getLogger('fhstandard')
logger.info('info message')
logger.error('error message')
execwrapper('ls -alt')
#
execwrapper('ls --alt')
print ('ALL TESTS RUN')
def sqltab2dic(self, tabinfo, filterinfo=None, ignoreinfo=None, distinct=True):
"""
retrieving python dictionary from table
tabinfo: tuple with table name and following column names (key,value; only two allowed)
ignore,ignorecolumn: optional parameter - if set SQL: ...WHERE ignorecolumn != 'ignore'
distinct: if true : SQL: SELECT DISTINCT ...
dic: dictionary
"""
if not ignoreinfo: ignoreinfo = []
if not filterinfo: filterinfo = []
newtable = self.sql2tab(tabinfo, filterinfo=filterinfo, ignoreinfo=ignoreinfo, distinct=distinct)
tulis = newtable.data
dic = keylis2dic(tulis)
if len(tulis) != len(dic):
print '\nsqltab2dic: duplicates eliminated uncontrolled in {0} in database {1}'.format(newtable.tablename,
self.database)
val = [item[0] for item in tulis]
valset = set(val)
infos = [(item, val.count(item)) for item in valset if val.count(item) > 1]
print infos[0]
return dic
def testrun(self):
# self.testtable()
print('test 1')
d = {'a': 1, 'b': 1, 'c': 1, 'd': 7}
ind = dictinvert(d)
ind2 = dictinvert(ind)
print(d)
print(ind)
print(ind2)
d = {1: ['a', 'b', 'b'], 7: ['d']}
ind = dictinvert(d)
ind2 = dictinvert(ind)
print(d)
print(ind)
print(ind2)
d = {1: ['ahh', 'bjjj', 'bjjj'], 7: ['oood']}
ind = dictinvert(d)
ind2 = dictinvert(ind)
print(d)
print(ind)
print(ind2)
a = [
'ver-1.3.12', 'ver-1.3.3', 'ver-1.2.5', 'ver-1.2.15', 'ver-1.2.3',
'ver-1.2.1'
]
b = natsorted(a)
print(a, '\n', b)
tulis = [('yellow', 1), ('blue', 2), ('yellow', 3), ('blue', 4),
('red', 1)]
d = keylis2dic(tulis)
print(d['blue'])
self.assertEqual(list(d.items()), [('blue', [2, 4]), ('red', [1]),
('yellow', [1, 3])])
confirmed = filterconsecutive(mtchlis=[0, 1, 2, 5, 6, 7, 10, 12, 13])
self.assertEqual(confirmed, [(0, 2), (5, 7), (10, 10), (12, 13)])
print(renamefilename(os.path.join('', 'oop.GRF.fastaR'), 'hih', 'iii'))
print(
renamefilename('/llll/kllklkkl/annotationfilename.txt',
prefix='txt'))
import logging
setup_logging()
logger = logging.getLogger('fhstandard')
logger.info('info message')
logger.error('error message')
execwrapper('ls -alt')
#
execwrapper('ls --alt')
print('ALL TESTS RUN')