def concat(fdarray):
"""Merge FlowData together
"""
pd_data = [fd.panda for fd in fdarray]
new_panda = pd.concat(pd_data)
md = fdarray[0]._metadata
# Clean up the metadata
md['$FIL'] = 'merged data'
newfd = FlowData(panda=new_panda, metadata=md)
return newfd
import numpy as np
from flowdata import FlowData
import matplotlib.pyplot as plt
fd = FlowData('test.fcs')
print fd.markers
(xgrid,den) = fd.histogram(5)
print xgrid
print den
fig, ax = plt.subplots()
ax.semilogy(xgrid,den)
plt.show()
#!/usr/bin/env python
# vim: tabstop=8 expandtab shiftwidth=4 softtabstop=4
from timeit import Timer
from flowdata import FlowData
import pandas as pd
import numpy as np
fd = FlowData('test.fcs')
print fd.tags
print fd.markers
print len(fd.CD45)
print fd.get('TIM-3')
data = fd._data
x = fd.get('TIM-3')
y = fd.get('CD45')
i = y > 10
print len(i)
print data[:,y>10]
numpy_select = Timer("""x = fd.get('TIM-3'); y = fd.get('CD45'); x[y>10]""",setup="""from flowdata import FlowData; fd = FlowData('test.fcs'); """)
it = 1000
print "Time per select (Numpy) {} ms".format(numpy_select.timeit(it)/it*1000)
df = pd.DataFrame({'TIM-3':x, 'CD45':y})
#print df
#! /opt/local/bin/python
from flowdata import FlowData
fd = FlowData('test.fcs')
fd.tsne('visne', sample = 100)
fd.write('test_write.fcs')
#fcs.write('test_write.fcs',data, metadata)