def test_fill_in_properties_fmap2(self):
""" """
# Define inputs
context = {
'ext': '.nii.gz',
'file': {
'name': 'sub-01_ses-01_acq-01_dir-label1_run-03_epi.nii.gz',
'info': {
'BIDS': {
'Dir': '',
'Run': '',
'Modality': '',
'Folder': '',
'Filename': ''
}
}
}
}
folder_name = 'fmap'
# Define expected outputs
meta_info_expected = {
'BIDS': {
'Dir': 'label1',
'Run': '03',
'Modality': 'epi',
'Folder': folder_name,
'Filename': context['file']['name']
}
}
# Call function
meta_info = upload_bids.fill_in_properties(context, folder_name, True)
# Assert equal
self.assertEqual(meta_info_expected, meta_info)
def test_fill_in_properties_func(self):
""" """
# Define inputs
context = {
'ext': '.nii',
'file': {
'name': 'sub-01_ses-01_task-label1_acq-01_rec-label2_run-01_echo-2_bold.nii',
'info': {
'BIDS': {
'Task': '',
'Rec': '',
'Run': '',
'Echo': '',
'Modality': '',
'Folder': '',
'Filename': ''
}
}
}
}
folder_name = 'func'
# Define expected outputs
meta_info_expected = {
'BIDS': {
'Task': 'label1',
'Rec': 'label2',
'Run': '01',
'Echo': '2',
'Modality': 'bold',
'Folder': folder_name,
'Filename': context['file']['name']
}
}
# Call function
meta_info = upload_bids.fill_in_properties(context, folder_name, True)
# Assert equal
self.assertEqual(meta_info_expected, meta_info)
def test_fill_in_properties_dicoms_without_local_values(self):
""" """
# Define inputs
context = {
'ext': '.dcm.zip',
'file': {
'name': 'sub-01_ses-01_acq-01_ce-label1_rec-label2_run-01_mod-label3_T1w.dcm.zip',
'info': {
'BIDS': {
'Ce': '',
'Rec': '',
'Run': '03',
'Mod': '',
'Modality': '',
'Folder': 'sourcedata',
'Filename': ''
}
}
}
}
folder_name = 'anat'
# Define expected outputs
meta_info_expected = {
'BIDS': {
'Ce': 'label1',
'Rec': 'label2',
'Run': '03',
'Mod': 'label3',
'Modality': 'T1w',
'Folder': 'sourcedata',
'Filename': context['file']['name']
}
}
# Call function
meta_info = upload_bids.fill_in_properties(context, folder_name, False)
# Assert equal
self.assertEqual(meta_info_expected, meta_info)
def test_fill_in_properties_anat(self):
""" """
# Define inputs
context = {
'ext': '.nii.gz',
'file': {
'name': 'sub-01_ses-01_acq-01_ce-label1_rec-label2_run-01_mod-label3_T1w.nii.gz',
'info': {
'BIDS': {
'Ce': '',
'Rec': '',
'Run': '',
'Mod': '',
'Modality': '',
'Folder': '',
'Filename': ''
}
}
}
}
folder_name = 'anat'
# Define expected outputs
meta_info_expected = {
'BIDS': {
'Ce': 'label1',
'Rec': 'label2',
'Run': '01',
'Mod': 'label3',
'Modality': 'T1w',
'Folder': folder_name,
'Filename': context['file']['name']
}
}
# Call function
meta_info = upload_bids.fill_in_properties(context, folder_name, True)
# Assert equal
self.assertEqual(meta_info_expected, meta_info)
