def test_grouped_nif_reader(self):
p = os.path.join(self.data_dir, "nif_context.tql")
parsed = {}
for context, statements in ContextGroupedNIFReader(p):
for statement in statements:
s, v, o = statement
r = get_resource_fragment(v)
n = get_resource_name(s)
try:
parsed[get_resource_name(s)].append(r)
except KeyError:
parsed[get_resource_name(s)] = [r]
expected = {
"Animalia_(book)": [
"type",
"beginIndex",
"endIndex",
"sourceUrl",
"isString",
"predLang",
],
"List_of_Atlas_Shrugged_characters": [
"type",
"beginIndex",
"endIndex",
"sourceUrl",
],
}
self.assertEqual(parsed, expected)
def add_wiki_info(self, pack: DataPack, statements: List[state_type]):
for _, _, o in statements:
resource_name = get_resource_name(o)
if resource_name is not None:
wc = WikiCategory(pack)
wc.values.append(resource_name)
pack.add_entry(wc)
def _collect( # type: ignore
self, nif_context: str
) -> Iterator[Dict[str, str]]:
str_data: Dict[str, str] = {}
for context_statements in NIFParser(nif_context):
for s, v, o, c in context_statements:
nif_type = get_resource_attribute(s, "nif")
print_progress(f"Collecting DBpedia resource: [{c.identifier}]")
fragment = get_resource_fragment(v)
if (
nif_type
and nif_type == "context"
and fragment is not None
and fragment == "isString"
):
str_data["text"] = o.toPython()
doc_name: Optional[str] = get_resource_name(s)
old_id: Optional[str] = get_resource_attribute(
c.identifier, "oldid"
)
if doc_name is not None and old_id is not None:
str_data["doc_name"] = doc_name
str_data["oldid"] = old_id
yield str_data
def add_wiki_info(self, pack: DataPack, statements: List):
for _, v, o in statements:
slot_name = v.toPython()
slot_value = get_resource_name(o)
info_box = WikiInfoBoxProperty(pack)
info_box.key = slot_name
info_box.value = slot_value
def add_wiki_info(self, pack: DataPack, info_box_statements: List):
for _, v, o in info_box_statements:
name = get_resource_name(o)
if name is not None:
info_box = WikiInfoBoxMapped(pack)
info_box.key = v.toPython()
info_box.value = name
def _collect( # type: ignore
self, nif_path: str) -> Iterator[Tuple[str, Dict[
str, List[state_type]]]]:
for _, statements in ContextGroupedNIFReader(nif_path):
name = get_resource_name(statements[0][0])
if name is not None:
yield name, statements
def add_wiki_info(self, pack: DataPack, statements: List):
link_grouped: DefaultDict[
str, Dict[str, rdflib.term.Node]
] = defaultdict(dict)
for nif_range, rel, info in statements:
range_ = get_resource_attribute(nif_range, "char")
r = get_resource_fragment(rel)
if range_ is not None and r is not None:
link_grouped[range_][r] = info
for range_, link_infos in link_grouped.items():
begin, end = [int(d) for d in range_.split(",")]
if end > len(pack.text):
# Some nif dataset are off by a bit, mostly when there are
# new line characters, we cannot correct them.
# but we need to make sure they don't go longer than the
# text.
logging.info(
"Provided anchor end is %d, "
"clipped to fit with the text.",
end,
)
end = len(pack.text)
if end <= begin:
logging.info("Provided anchor [%d:%d is invalid.]", begin, end)
continue
for info_key, info_value in link_infos.items():
info_value = str(info_value)
if info_key == "type":
anchor_type = get_resource_fragment(info_value)
if (
not anchor_type == "Phrase"
and not anchor_type == "Word"
):
logging.warning("Unknown anchor type: %s", info_value)
if info_key == "taIdentRef":
target_page_name = get_resource_name(info_value)
if (
target_page_name is not None
and target_page_name in self._redirects
):
target_page_name = self._redirects[target_page_name]
if target_page_name is not None:
# Only create anchor with proper link.
anchor = WikiAnchor(pack, begin, end)
anchor.target_page_name = target_page_name
# If it is an DBpedia resource, the domain will be
# truncated, otherwise it will stay the same, meaning
# it is an external link.
anchor.is_external = target_page_name == str(info_value)
def test_grouped_nif_reader(self):
p = os.path.join(self.data_dir, 'nif_context.tql')
parsed = {}
for context, statements in ContextGroupedNIFReader(p):
for statement in statements:
s, v, o = statement
r = get_resource_fragment(v)
try:
parsed[get_resource_name(s)].append(r)
except KeyError:
parsed[get_resource_name(s)] = [r]
expected = {
'Animalia_(book)': [
'type', 'beginIndex', 'endIndex', 'sourceUrl', 'isString',
'predLang'
],
'List_of_Atlas_Shrugged_characters':
['type', 'beginIndex', 'endIndex', 'sourceUrl']
}
self.assertEqual(parsed, expected)
def _collect( # type: ignore
self, nif_path: str
) -> Iterator[Tuple[str, Dict[str, List[state_type]]]]:
skipped = 0
for _, statements in ContextGroupedNIFReader(nif_path):
name = get_resource_name(statements[0][0])
if name is not None:
if name not in self._resume_index:
yield name, statements
else:
skipped += 1
print_progress(
f"Skipped {skipped} documents", terminal_only=True
)
def load_from_nif(link_file, output_file):
linkings = {}
bilinks = []
num_articles = 0
num_bilinks = 0
start_time = timeit.default_timer()
with open(output_file, "w") as out:
for _, statements in ContextGroupedNIFReader(link_file):
num_articles += 1
for nif_range, rel, info in statements:
r = get_resource_fragment(rel)
if r is not None and r == "taIdentRef":
src_name = get_resource_name(nif_range)
target_name = get_resource_name(info)
if src_name == target_name:
continue
if linkings.get(target_name, None) == src_name:
bilinks.append((src_name, target_name))
linkings.pop(target_name)
num_bilinks += 1
out.write(f"{src_name}\t{target_name}\n")
out.flush()
else:
linkings[src_name] = target_name
elapsed = timeit.default_timer() - start_time
print_progress(
f"{num_bilinks} bi-links found in {num_articles} after "
f"{datetime.timedelta(seconds=elapsed)}, speed is "
f"{num_articles / elapsed:.2f} (packs/second)."
)
def _collect(self, nif_context: str # type: ignore
) -> Iterator[Dict[str, str]]:
str_data: Dict[str, str] = {}
for context_statements in NIFParser(nif_context):
for s, v, o, c in context_statements:
nif_type = get_resource_attribute(s, "nif")
print_progress(f'Collecting DBpedia resource: [{c.identifier}]')
if nif_type and nif_type == "context" and get_resource_fragment(
v) == 'isString':
str_data['text'] = o.toPython()
str_data['doc_name'] = get_resource_name(s)
str_data['oldid'] = get_resource_attribute(
c.identifier, 'oldid')
yield str_data
def add_wiki_info(self, pack: DataPack, statements: List):
link_grouped: DefaultDict[str,
Dict[str,
rdflib.term.Node]] = defaultdict(dict)
for nif_range, rel, info in statements:
range_ = get_resource_attribute(nif_range, 'char')
r = get_resource_fragment(rel)
if range_ is not None and r is not None:
link_grouped[range_][r] = info
for range_, link_infos in link_grouped.items():
begin, end = [int(d) for d in range_.split(',')]
if end > len(pack.text):
# Some nif dataset are off by a bit, mostly when there are
# new line characters, we cannot correct them.
# but we need to make sure they don't go longer than the
# text.
logging.info(
"Provided anchor end is %d, "
"clipped to fit with the text.", end)
end = len(pack.text)
if end <= begin:
logging.info("Provided anchor [%d:%d is invalid.]", begin, end)
continue
anchor = WikiAnchor(pack, begin, end)
for info_key, info_value in link_infos.items():
if info_key == 'type':
anchor_type = get_resource_fragment(info_value)
if (not anchor_type == 'Phrase'
and not anchor_type == 'Word'):
logging.warning("Unknown anchor type: %s", info_value)
if info_key == 'taIdentRef':
target_page_name = get_resource_name(info_value)
if (target_page_name is not None
and target_page_name in self._redirects):
target_page_name = self._redirects[target_page_name]
anchor.target_page_name = target_page_name
def test_nif_parser(self):
p = os.path.join(self.data_dir, "nif_page_structure.tql")
parsed = []
for statements in NIFParser(p):
for statement in statements:
s, v, o, c = statement
parsed.append(
(
context_base(c),
get_resource_fragment(v),
get_resource_name(s),
strip_url_params(s),
)
)
expected = [
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"type",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"notation",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"beginIndex",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"endIndex",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"referenceContext",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"superString",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"hasSection",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"firstSection",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"lastSection",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"type",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"beginIndex",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"endIndex",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"referenceContext",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"superString",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"hasParagraph",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"lastParagraph",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"type",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"notation",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"beginIndex",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"endIndex",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"referenceContext",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"superString",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"hasSection",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"firstSection",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"type",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"referenceContext",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"beginIndex",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
(
"http://en.wikipedia.org/wiki/Animalia_(book)",
"endIndex",
"Animalia_(book)",
"http://dbpedia.org/resource/Animalia_(book)",
),
]
self.assertEqual(parsed, expected)
def test_nif_parser(self):
p = os.path.join(self.data_dir, 'nif_page_structure.tql')
parsed = []
for statements in NIFParser(p):
for statement in statements:
s, v, o, c = statement
parsed.append((context_base(c), get_resource_fragment(v),
get_resource_name(s), strip_url_params(s)))
expected = [
('http://en.wikipedia.org/wiki/Animalia_(book)', 'type',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'notation',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'beginIndex',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'endIndex',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)',
'referenceContext', 'Animalia_(book)',
'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'superString',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'hasSection',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'firstSection',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'lastSection',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'type',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'beginIndex',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'endIndex',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)',
'referenceContext', 'Animalia_(book)',
'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'superString',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'hasParagraph',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'lastParagraph',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'type',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'notation',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'beginIndex',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'endIndex',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)',
'referenceContext', 'Animalia_(book)',
'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'superString',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'hasSection',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'firstSection',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'type',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)',
'referenceContext', 'Animalia_(book)',
'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'beginIndex',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)'),
('http://en.wikipedia.org/wiki/Animalia_(book)', 'endIndex',
'Animalia_(book)', 'http://dbpedia.org/resource/Animalia_(book)')
]
self.assertEqual(parsed, expected)
def _collect(self, nif_path: str # type: ignore
) -> Iterator[Tuple[str, Dict[str, List[state_type]]]]:
for _, statements in ContextGroupedNIFReader(nif_path):
yield get_resource_name(statements[0][0]), statements
