def testRun(self):
model = load_sbml_model(SMALL_TEST_MODEL, kind=GPR_CONSTRAINED)
fix_bigg_model(model)
simplify(model)
solution = FBA(model)
self.assertEqual(solution.status, Status.OPTIMAL)
self.assertAlmostEqual(solution.fobj, GROWTH_RATE, places=2)
def testRun(self):
model = load_sbml_model(SMALL_TEST_MODEL, kind=GPR_CONSTRAINED)
fix_bigg_model(model)
simplify(model)
make_irreversible(model)
simplify(model) #remove directionally blocked reactions
model2 = load_sbml_model(SMALL_TEST_MODEL, kind=GPR_CONSTRAINED)
fix_bigg_model(model2)
make_irreversible(model2)
simplify(model2)
self.assertEqual(model.id, model2.id)
self.assertListEqual(model.metabolites.keys(), model2.metabolites.keys())
self.assertListEqual(model.reactions.keys(), model2.reactions.keys())
self.assertDictEqual(model.stoichiometry, model2.stoichiometry)
self.assertDictEqual(model.bounds, model2.bounds)
self.assertListEqual(model.genes.keys(), model2.genes.keys())
self.assertDictEqual(model.rules, model2.rules)