def testRepeatAnalysis(self):
state = helper_functions.server({'request':'get_analyses'})
n = len(state['analyses'])
#test analysis not already present:
self.assertFalse(os.path.exists(self.rdp_analysis_dir))
server_request = {'request': 'exec_analysis',
'analysis_type': u'rdp',
'job_description': u'test',
'seperator': u'_',
'data_file_sha1sum': self.analysis_id,
'data_file_path': self.test_fasta_file,
'return_when_done': True}
helper_functions.server(server_request)
#request was executed:
self.assertTrue(os.path.exists(self.rdp_analysis_dir))
state = helper_functions.server({'request':'get_analyses'})
self.assertTrue(len(state['analyses']) == n+1)
#try to run the analysis again:
server_response = helper_functions.server(server_request)
#len should still be n+1:
self.assertTrue(len(state['analyses']) == n+1)
#clean up:
rm_request = {'request': 'remove_analysis',
'analysis_id': self.analysis_id}
helper_functions.server(rm_request)
state = helper_functions.server({'request':'get_analyses'})
#remove was successful:
self.assertTrue(len(state['analyses']) == n)
def testEnvCreation(self):
server_request = {'request': 'exec_analysis',
'analysis_type': u'rdp',
'job_description': u'test',
'seperator': u'_',
'data_file_sha1sum': self.analysis_id,
'data_file_path': self.test_fasta_file,
'return_when_done': True}
helper_functions.server(server_request)
self.assertTrue(os.path.exists(self.rdp_analysis_dir))
self.assertTrue(os.path.exists(os.path.join(self.rdp_analysis_dir,c.env_file_name)))
#clean up:
rm_request = {'request': 'remove_analysis',
'analysis_id': self.analysis_id}
helper_functions.server(rm_request)
def testServerError(self):
server_request = {'request': 'exec_analysis',
'analysis_type': u'bad_value',
'job_description': u'test',
'seperator': u'_',
'data_file_sha1sum': self.analysis_id,
'data_file_path': self.test_fasta_file,
'return_when_done': True}
response = helper_functions.server(server_request)
self.assertTrue(response['response'] == 'error')
self.assertFalse(os.path.exists(self.rdp_analysis_dir))
def __init__(self, *args, **kwargs):
super(BlastUploadForm, self).__init__(*args, **kwargs)
req = {"request": "list", "resource": "blastdb"}
resp = helper_functions.server(req)
self.fields["db_name"] = forms.ChoiceField(choices=[(r["id"], r["id"]) for r in resp["resources"]])
def server(self, request):
return helper_functions.server(request)