def get_data_stream(iterable):
dataset = IterableDataset({'numbers': iterable})
data_stream = Mapping(dataset.get_example_stream(),
_data_sqrt,
add_sources=('roots', ))
data_stream = Mapping(data_stream, _array_tuple)
return Batch(data_stream, ConstantScheme(20))
def open_stream(which_sets=('train', ), port=5557, num_examples=None):
dataset = Blizzard(which_sets=which_sets)
if num_examples == None:
num_examples = dataset.num_examples
data_stream = DataStream.default_stream(dataset,
iteration_scheme=SequentialScheme(
num_examples, batch_size))
data_stream = ScaleAndShift(data_stream,
scale=1 / data_std,
shift=-data_mean / data_std)
data_stream = Mapping(data_stream,
_downsample_and_upsample,
add_sources=('upsampled', ))
data_stream = Mapping(data_stream, _equalize_size)
data_stream = Mapping(data_stream,
_get_residual,
add_sources=('residual', ))
data_stream = FilterSources(data_stream,
sources=(
'upsampled',
'residual',
))
data_stream = Mapping(data_stream, _segment_axis)
data_stream = Mapping(data_stream, _transpose)
data_stream = ForceFloatX(data_stream)
start_server(data_stream, port=port)
def indexData(self):
labCounts = graph_helper.getLabelCounts(
self.G, self.trainNodes + self.validationNodes)
trainXY, trainIDs = encode_data_VarLen(
self.G,
self.trainNodes,
self.attrKey,
self.maxNeighbors,
usePrevWeights=self.usePrevWeights,
useActualLabs=self.useActualLabs,
onlyLabs=self.onlyLabs,
useInputX2=self.useInputX2,
labCounts=labCounts,
dataAug=self.dataAug,
pageRankOrder=self.pageRankOrder,
usePro=self.usePro,
lastH=self.lastHH,
nodeIDs=True)
validationXY, testIDs = encode_data_VarLen(
self.G,
self.validationNodes,
self.attrKey,
self.maxNeighbors,
labCounts=labCounts,
usePrevWeights=self.usePrevWeights,
useActualLabs=self.useActualLabs,
onlyLabs=self.onlyLabs,
useInputX2=self.useInputX2,
pageRankOrder=self.pageRankOrder,
usePro=self.usePro,
lastH=self.lastHH,
nodeIDs=True)
self.input_dimx1 = trainXY['x'][0].shape[1]
if 'x2' in trainXY:
self.input_dimx2 = trainXY['x2'].shape[1]
dataset_train = IndexableDataset(trainXY)
dataset_valid = IndexableDataset(validationXY)
self.num_examples_train = dataset_train.num_examples
self.num_examples_valid = dataset_valid.num_examples
if self.usePro:
transpose_stream = self.transpose_streamPro
else:
transpose_stream = self.transpose_stream
self.stream_train = DataStream(dataset=dataset_train,
iteration_scheme=ShuffledScheme(
examples=dataset_train.num_examples,
batch_size=self.batch_size))
self.stream_train = Padding(self.stream_train, mask_sources=['x'])
self.stream_train = Mapping(self.stream_train, transpose_stream)
self.stream_valid = DataStream(dataset=dataset_valid,
iteration_scheme=ShuffledScheme(
examples=dataset_valid.num_examples,
batch_size=self.batch_size))
self.stream_valid = Padding(self.stream_valid, mask_sources=['x'])
self.stream_valid = Mapping(self.stream_valid, transpose_stream)
def get_data_stream(iterable):
"""Returns a 'fuel.Batch' datastream of
[x~input~numbers, y~targets~roots], with each iteration returning a
batch of 20 training examples
"""
dataset = IterableDataset({'numbers': iterable})
data_stream = Mapping(dataset.get_example_stream(),
_data_sqrt,
add_sources=('roots', ))
data_stream = Mapping(data_stream, _array_tuple)
return Batch(data_stream, ConstantScheme(20))
def get_tr_stream(src_vocab, trg_vocab, src_data, trg_data,
src_vocab_size=30000, trg_vocab_size=30000, unk_id=1,
seq_len=50, batch_size=80, sort_k_batches=12, **kwargs):
"""Prepares the training data stream."""
# Load dictionaries and ensure special tokens exist
src_vocab = _ensure_special_tokens(
src_vocab if isinstance(src_vocab, dict)
else cPickle.load(open(src_vocab, 'rb')),
bos_idx=0, eos_idx=src_vocab_size - 1, unk_idx=unk_id)
trg_vocab = _ensure_special_tokens(
trg_vocab if isinstance(trg_vocab, dict) else
cPickle.load(open(trg_vocab, 'rb')),
bos_idx=0, eos_idx=trg_vocab_size - 1, unk_idx=unk_id)
# Get text files from both source and target
src_dataset = TextFile([src_data], src_vocab, None)
trg_dataset = TextFile([trg_data], trg_vocab, None)
# Merge them to get a source, target pair
stream = Merge([src_dataset.get_example_stream(),
trg_dataset.get_example_stream()],
('source', 'target'))
# Filter sequences that are too long
stream = Filter(stream,
predicate=_too_long(seq_len=seq_len))
# Replace out of vocabulary tokens with unk token
stream = Mapping(stream,
_oov_to_unk(src_vocab_size=src_vocab_size,
trg_vocab_size=trg_vocab_size,
unk_id=unk_id))
# Build a batched version of stream to read k batches ahead
stream = Batch(stream,
iteration_scheme=ConstantScheme(
batch_size*sort_k_batches))
# Sort all samples in the read-ahead batch
stream = Mapping(stream, SortMapping(_length))
# Convert it into a stream again
stream = Unpack(stream)
# Construct batches from the stream with specified batch size
stream = Batch(
stream, iteration_scheme=ConstantScheme(batch_size))
# Pad sequences that are short
masked_stream = PaddingWithEOS(
stream, [src_vocab_size - 1, trg_vocab_size - 1])
return masked_stream
def test_mapping():
data = [1, 2, 3]
data_doubled = [2, 4, 6]
stream = DataStream(IterableDataset(data))
wrapper1 = Mapping(stream, lambda d: (2 * d[0], ))
assert list(wrapper1.get_epoch_iterator()) == list(zip(data_doubled))
wrapper2 = Mapping(stream,
lambda d: (2 * d[0], ),
add_sources=("doubled", ))
assert wrapper2.sources == ("data", "doubled")
assert list(wrapper2.get_epoch_iterator()) == list(zip(data, data_doubled))
def test_mapping_sort():
data = [[1, 2, 3], [2, 3, 1], [3, 2, 1]]
data_sorted = [[1, 2, 3]] * 3
data_sorted_rev = [[3, 2, 1]] * 3
stream = DataStream(IterableDataset(data))
wrapper1 = Mapping(stream, SortMapping(operator.itemgetter(0)))
assert list(wrapper1.get_epoch_iterator()) == list(zip(data_sorted))
wrapper2 = Mapping(stream, SortMapping(lambda x: -x[0]))
assert list(wrapper2.get_epoch_iterator()) == list(zip(data_sorted_rev))
wrapper3 = Mapping(stream, SortMapping(operator.itemgetter(0),
reverse=True))
assert list(wrapper3.get_epoch_iterator()) == list(zip(data_sorted_rev))
def get_sgnmt_tr_stream(src_data,
trg_data,
src_vocab_size=30000,
trg_vocab_size=30000,
unk_id=1,
seq_len=50,
batch_size=80,
sort_k_batches=12,
**kwargs):
"""Prepares the unshuffled training data stream. This corresponds
to ``get_sgnmt_tr_stream`` in ``machine_translation/stream`` in the
blocks examples."""
# Build dummy vocabulary to make TextFile happy
src_vocab = add_special_ids({str(i): i for i in xrange(src_vocab_size)})
trg_vocab = add_special_ids({str(i): i for i in xrange(trg_vocab_size)})
# Get text files from both source and target
src_dataset = TextFile([src_data], src_vocab, None)
trg_dataset = TextFile([trg_data], trg_vocab, None)
# Merge them to get a source, target pair
s = Merge(
[src_dataset.get_example_stream(),
trg_dataset.get_example_stream()], ('source', 'target'))
# Filter sequences that are too long
s = Filter(s, predicate=stream._too_long(seq_len=seq_len))
# Replace out of vocabulary tokens with unk token
s = Mapping(
s,
stream._oov_to_unk(src_vocab_size=src_vocab_size,
trg_vocab_size=trg_vocab_size,
unk_id=utils.UNK_ID))
# Build a batched version of stream to read k batches ahead
s = Batch(s, iteration_scheme=ConstantScheme(batch_size * sort_k_batches))
# Sort all samples in the read-ahead batch
s = Mapping(s, SortMapping(stream._length))
# Convert it into a stream again
s = Unpack(s)
# Construct batches from the stream with specified batch size
s = Batch(s, iteration_scheme=ConstantScheme(batch_size))
# Pad sequences that are short
masked_stream = stream.PaddingWithEOS(s, [utils.EOS_ID, utils.EOS_ID])
return masked_stream
def get_sgnmt_shuffled_tr_stream(src_data,
trg_data,
src_vocab_size=30000,
trg_vocab_size=30000,
unk_id=1,
seq_len=50,
batch_size=80,
sort_k_batches=12,
**kwargs):
"""Prepares the shuffled training data stream. This is similar to
``get_sgnmt_tr_stream`` but uses ``ParallelTextFile`` in combination
with ``ShuffledExampleScheme`` to support reshuffling."""
# Build dummy vocabulary to make TextFile happy
src_vocab = add_special_ids({str(i): i for i in xrange(src_vocab_size)})
trg_vocab = add_special_ids({str(i): i for i in xrange(trg_vocab_size)})
parallel_dataset = ParallelTextFile(src_data, trg_data, src_vocab,
trg_vocab, None)
#iter_scheme = SequentialExampleScheme(parallel_dataset.num_examples)
iter_scheme = ShuffledExampleScheme(parallel_dataset.num_examples)
s = DataStream(parallel_dataset, iteration_scheme=iter_scheme)
# Filter sequences that are too long
s = Filter(s, predicate=stream._too_long(seq_len=seq_len))
# Replace out of vocabulary tokens with unk token
s = Mapping(
s,
stream._oov_to_unk(src_vocab_size=src_vocab_size,
trg_vocab_size=trg_vocab_size,
unk_id=utils.UNK_ID))
# Build a batched version of stream to read k batches ahead
s = Batch(s, iteration_scheme=ConstantScheme(batch_size * sort_k_batches))
# Sort all samples in the read-ahead batch
s = Mapping(s, SortMapping(stream._length))
# Convert it into a stream again
s = Unpack(s)
# Construct batches from the stream with specified batch size
s = Batch(s, iteration_scheme=ConstantScheme(batch_size))
# Pad sequences that are short
masked_stream = stream.PaddingWithEOS(s, [utils.EOS_ID, utils.EOS_ID])
return masked_stream
def setup_squad_datastream(path, vocab_file, config):
ds = SQuADDataset(path, vocab_file)
it = SQuADIterator(path)
stream = DataStream(ds, iteration_scheme=it)
if config.concat_ctx_and_question:
stream = ConcatCtxAndQuestion(stream, config.concat_question_before,
ds.reverse_vocab['<DUMMY>'])
# Sort sets of multiple batches to make batches of similar sizes
stream = Batch(stream,
iteration_scheme=ConstantScheme(config.batch_size *
config.sort_batch_count))
comparison = _balanced_batch_helper(stream.sources.index('context'))
stream = Mapping(stream, SortMapping(comparison))
stream = Unpack(stream)
stream = Batch(stream, iteration_scheme=ConstantScheme(config.batch_size))
stream = Padding(stream,
mask_sources=[
'context', 'question', 'answer', 'ans_indices',
'ans_boundaries'
],
mask_dtype='int32')
return ds, stream
def test_mapping_accepts_list_or_dict(self):
def mapping(d):
return [2 * i for i in d[0]],
stream = DataStream(IterableDataset(self.data))
assert_raises(ValueError,
lambda: Mapping(stream, mapping, mapping_accepts=int))
def get_train_stream(configuration, sfiles, tfiles, svocab_dict, tvocab_dict):
s_dataset = TextFile(sfiles, svocab_dict, bos_token=None, eos_token=None,\
unk_token='<unk>', level='word', preprocess=None, encoding='utf8')
t_dataset = TextFile(tfiles, tvocab_dict, bos_token=None, eos_token=None,\
unk_token='<unk>', level='word', preprocess=None, encoding='utf8')
# Merge
stream = Merge([s_dataset.get_example_stream(),
t_dataset.get_example_stream()],
('source', 'target'))
# Filter -- TODO
stream = Filter(stream, predicate=_too_long(seq_len=configuration['seq_len']))
# Map - no need
# Batch - Sort
stream = Batch(stream,
iteration_scheme=ConstantScheme(
configuration['batch_size']*configuration['sort_k_batches']))
stream = Mapping(stream, SortMapping(_length))
stream = Unpack(stream)
stream = Batch(
stream, iteration_scheme=ConstantScheme(configuration['batch_size']))
# Pad
# Note that </s>=0. Fuel only allows padding 0 by default
masked_stream = Padding(stream)
return masked_stream
def get_tr_stream(src_vocab, trg_vocab, src_data, trg_data,
src_vocab_size=30000, trg_vocab_size=30000,
unk_id=0, eos_id=1, bos_id=2, train_noise=0,
seq_len=50, batch_size=80, sort_k_batches=12, **kwargs):
src_stream = get_stream(src_vocab, src_data, src_vocab_size, unk_id, eos_id, bos_id, train_noise)
trg_stream = get_stream(trg_vocab, trg_data, trg_vocab_size, unk_id, eos_id, bos_id, 0)
# Merge them to get a source, target pair
stream = Merge([src_stream, trg_stream], ('source', 'target'))
# Filter sequences that are too long
stream = Filter(stream, predicate=_not_too_long(seq_len))
# Build a batched version of stream to read k batches ahead
stream = Batch(stream, iteration_scheme=ConstantScheme(batch_size * sort_k_batches))
# Sort all samples in the read-ahead batch
stream = Mapping(stream, SortMapping(_length))
# Convert it into a stream again
stream = Unpack(stream)
# Construct batches from the stream with specified batch size
stream = Batch(stream, iteration_scheme=ConstantScheme(batch_size))
# Pad sequences that are short
return PaddingWithEOS(stream, [eos_id, eos_id])
def train(self):
print "Loading data"
datafile = self.get_datafile()
nbexamples = datafile.num_examples
nbexamples -= nbexamples % (self.sequence_dim * self.time_dim)
train_stream = ReshapeTransformer(
DataStream(dataset=datafile,
iteration_scheme=ShuffledBatchChunkScheme(
nbexamples, self.sequence_dim * self.time_dim)),
self.sequence_dim, self.time_dim)
if self.image_size is not None:
train_stream = Mapping(train_stream,
spec_mapping,
add_sources=['spectrogram'])
print "Building Theano Graph"
algorithm, self.fprop = self.build_theano_functions()
main_loop = MainLoop(algorithm=algorithm,
data_stream=train_stream,
model=self.model,
extensions=[
FinishAfter(after_n_epochs=EPOCHS),
TrainingDataMonitoring(
[aggregation.mean(self.model.outputs[0])],
prefix="train",
after_epoch=True),
Printing(),
SaveParams(EXP_PATH + NAME, after_epoch=True)
])
main_loop.run()
def setup_datastream(path, batch_size, sort_batch_count, valid=False):
A = numpy.load(
os.path.join(path,
('valid_x_raw.npy' if valid else 'train_x_raw.npy')))
B = numpy.load(
os.path.join(path, ('valid_phn.npy' if valid else 'train_phn.npy')))
C = numpy.load(
os.path.join(
path,
('valid_seq_to_phn.npy' if valid else 'train_seq_to_phn.npy')))
D = [B[x[0]:x[1], 2] for x in C]
ds = IndexableDataset({'input': A, 'output': D})
stream = DataStream(ds, iteration_scheme=ShuffledExampleScheme(len(A)))
stream = Batch(stream,
iteration_scheme=ConstantScheme(batch_size *
sort_batch_count))
comparison = _balanced_batch_helper(stream.sources.index('input'))
stream = Mapping(stream, SortMapping(comparison))
stream = Unpack(stream)
stream = Batch(stream,
iteration_scheme=ConstantScheme(batch_size,
num_examples=len(A)))
stream = Padding(stream, mask_sources=['input', 'output'])
return ds, stream
def setup_squad_ranker_datastream(path,
vocab_file,
config,
example_count=1836975):
ds = SQuADRankerDataset(path, vocab_file)
it = ShuffledExampleScheme(examples=example_count)
stream = DataStream(ds, iteration_scheme=it)
# Sort sets of multiple batches to make batches of similar sizes
stream = Batch(stream,
iteration_scheme=ConstantScheme(config.batch_size *
config.sort_batch_count))
comparison = _balanced_batch_helper(stream.sources.index('question'))
stream = Mapping(stream, SortMapping(comparison))
stream = Unpack(stream)
stream = Batch(stream, iteration_scheme=ConstantScheme(config.batch_size))
stream = Padding(stream,
mask_sources=[
'question', 'answer', 'better', 'worse', 'b_left',
'b_right', 'w_left', 'w_right'
],
mask_dtype='int32')
return ds, stream
def setup_datastream(path, vocab_file, config):
ds = QADataset(path,
vocab_file,
config.n_entities,
need_sep_token=config.concat_ctx_and_question)
it = QAIterator(path, shuffle=config.shuffle_questions)
stream = DataStream(ds, iteration_scheme=it)
if config.concat_ctx_and_question:
stream = ConcatCtxAndQuestion(stream, config.concat_question_before,
ds.reverse_vocab['<SEP>'])
# Sort sets of multiple batches to make batches of similar sizes
stream = Batch(stream,
iteration_scheme=ConstantScheme(config.batch_size *
config.sort_batch_count))
comparison = _balanced_batch_helper(
stream.sources.index(
'question' if config.concat_ctx_and_question else 'context'))
stream = Mapping(stream, SortMapping(comparison))
stream = Unpack(stream)
print('sources')
print(stream.sources)
stream = Batch(stream, iteration_scheme=ConstantScheme(config.batch_size))
stream = Padding(stream,
mask_sources=['context', 'question', 'candidates'],
mask_dtype='int32')
print('sources2')
print(stream.sources)
return ds, stream
def framewise_timit_datastream(path, which_set, batch_size, local_copy=False):
# load frame-wise dataset
timit_dataset = FramewiseTimit(which_set=which_set,
path=path,
local_copy=local_copy)
# set shuffle range
shuffle_rng = numpy.random.RandomState(123)
# set iterator scheme
iterator_scheme = SequentialShuffledScheme(
num_examples=timit_dataset.num_examples,
batch_size=batch_size,
rng=shuffle_rng)
# base data stream
base_stream = DataStream(dataset=timit_dataset,
iteration_scheme=iterator_scheme)
# reshape data stream data_source, shape_source
reshape_stream = Reshape(data_source='features',
shape_source='features_shapes',
data_stream=base_stream,
iteration_scheme=iterator_scheme)
# sort data stream
sort_stream = Mapping(data_stream=reshape_stream,
mapping=SortMapping(key=lambda x: x[0].shape[0]))
# padding data stream
padded_stream = Padding(data_stream=sort_stream)
return padded_stream
def train(self, req_vars):
stream = TaxiDataset('train', data.traintest_ds)
if hasattr(self.config, 'use_cuts_for_training') and self.config.use_cuts_for_training:
stream = DataStream(stream, iteration_scheme=TaxiTimeCutScheme())
else:
stream = DataStream(stream, iteration_scheme=ShuffledExampleScheme(stream.num_examples))
if not data.tvt:
valid = TaxiDataset(data.valid_set, data.valid_ds, sources=('trip_id',))
valid_trips_ids = valid.get_data(None, slice(0, valid.num_examples))[0]
stream = transformers.TaxiExcludeTrips(stream, valid_trips_ids)
stream = transformers.TaxiGenerateSplits(stream, max_splits=self.config.max_splits)
if hasattr(self.config, 'shuffle_batch_size'):
stream = transformers.Batch(stream, iteration_scheme=ConstantScheme(self.config.shuffle_batch_size))
stream = Mapping(stream, SortMapping(key=UniformGenerator()))
stream = Unpack(stream)
stream = transformers.taxi_add_datetime(stream)
stream = transformers.taxi_add_first_last_len(stream, self.config.n_begin_end_pts)
stream = transformers.Select(stream, tuple(req_vars))
stream = Batch(stream, iteration_scheme=ConstantScheme(self.config.batch_size))
stream = MultiProcessing(stream)
return stream
def add_destination(stream):
fun = _add_destination_helper(stream.sources.index('latitude'),
stream.sources.index('longitude'))
return Mapping(stream,
fun,
add_sources=('destination_latitude',
'destination_longitude'))
def test_add_sources(self):
stream = DataStream(IterableDataset(self.data))
transformer = Mapping(stream, lambda d: ([2 * i for i in d[0]],),
add_sources=('doubled',))
assert_equal(transformer.sources, ('data', 'doubled'))
assert_equal(list(transformer.get_epoch_iterator()),
list(zip(self.data, [[2, 4, 6], [4, 6, 2], [6, 4, 2]])))
def get_log_prob_stream(cg, config):
eid, did = p_(cg)
dataset = config['log_prob_sets'][cg]
# Prepare source vocabs and files, make sure special tokens are there
src_vocab = cPickle.load(open(config['src_vocabs'][eid]))
src_vocab['<S>'] = 0
src_vocab['</S>'] = config['src_eos_idxs'][eid]
src_vocab['<UNK>'] = config['unk_id']
# Prepare target vocabs and files, make sure special tokens are there
trg_vocab = cPickle.load(open(config['trg_vocabs'][did]))
trg_vocab['<S>'] = 0
trg_vocab['</S>'] = config['trg_eos_idxs'][did]
trg_vocab['<UNK>'] = config['unk_id']
# Build the preprocessing pipeline for individual streams
logger.info('Building logprob stream for cg:[{}]'.format(cg))
src_dataset = TextFile([dataset[0]], src_vocab, None)
trg_dataset = TextFile([dataset[1]], trg_vocab, None)
stream = Merge(
[src_dataset.get_example_stream(),
trg_dataset.get_example_stream()], ('source', 'target'))
stream = Mapping(
stream,
_oov_to_unk(src_vocab_size=config['src_vocab_sizes'][eid],
trg_vocab_size=config['trg_vocab_sizes'][did],
unk_id=config['unk_id']))
bs = 100
if 'log_prob_bs' in config:
if isinstance(config['log_prob_bs'], dict):
bs = config['log_prob_bs'][cg]
else:
bs = config['log_prob_bs']
stream = Batch(stream,
iteration_scheme=ConstantScheme(bs,
num_examples=get_num_lines(
dataset[0])))
masked_stream = Padding(stream)
masked_stream = Mapping(
masked_stream,
_remapWordIdx([(0, 0, config['src_eos_idxs'][eid]),
(2, 0, config['trg_eos_idxs'][did])]))
return masked_stream
def get_stream(self,
part,
batch_size=None,
max_length=None,
seed=None,
remove_keys=False,
add_bos_=True,
remove_n_identical_keys=True):
dataset = self.get_dataset(part, max_length)
if self._layout == 'lambada' and part == 'train':
stream = DataStream(dataset,
iteration_scheme=RandomSpanScheme(
dataset.num_examples, max_length, seed))
stream = Mapping(stream, listify)
else:
stream = dataset.get_example_stream()
if add_bos_:
stream = SourcewiseMapping(stream,
functools.partial(
add_bos, Vocabulary.BOS),
which_sources=('words'))
if max_length != None:
stream = SourcewiseMapping(stream,
functools.partial(
cut_if_too_long, max_length),
which_sources=('words'))
stream = SourcewiseMapping(stream, vectorize, which_sources=('words'))
stream = SourcewiseMapping(stream,
word_to_singleton_list,
which_sources=('keys'))
stream = SourcewiseMapping(stream, vectorize, which_sources=('keys'))
stream = Flatten(stream, which_sources=('keys'))
if self._layout == 'dict':
if remove_keys:
stream = FilterSources(
stream,
[source for source in stream.sources if source != 'keys'])
if remove_n_identical_keys:
print "remove identical keys"
stream = FilterSources(stream, [
source for source in stream.sources
if source != 'n_identical_keys'
])
if not batch_size:
return stream
stream = Batch(stream, iteration_scheme=ConstantScheme(batch_size))
stream = Padding(stream, mask_sources=('words'))
#stream = Flatten(stream, which_sources=('n_identical_keys'))
#if self._layout == 'dict':
# stream = FilterSources(stream, [source for source in stream.sources
# if source != 'keys_mask'])
# stream = FilterSources(stream, [source for source in stream.sources
# if source != 'n_identical_keys_mask'])
return stream
def balanced_batch(stream, key, batch_size, batch_sort_size):
stream = Batch(stream,
iteration_scheme=ConstantScheme(batch_size *
batch_sort_size))
comparison = _balanced_batch_helper(stream.sources.index(key))
stream = Mapping(stream, SortMapping(comparison))
stream = Unpack(stream)
return Batch(stream, iteration_scheme=ConstantScheme(batch_size))
def taxi_add_first_last_len(stream, k):
fun = _taxi_add_first_last_len_helper(k, stream.sources.index('latitude'),
stream.sources.index('longitude'))
return Mapping(stream,
fun,
add_sources=('first_k_latitude', 'first_k_longitude',
'last_k_latitude', 'last_k_longitude',
'input_time'))
def define_stream(which_sets=('train',),
initial_scale=1,
scale=0.5,
batch_size=64,
seq_length=64,
frame_size=128,
tbptt_flag = True,
num_examples=None):
def _segment_axis(data):
# Defined inside so that frame_size is available
x = tuple([numpy.array([segment_axis(x, frame_size, 0) for x in var])
for var in data])
return x
scale = float(scale)
dataset = Blizzard(which_sets=which_sets)
if num_examples is None:
num_examples = batch_size*(dataset.num_examples/batch_size)
data_stream = DataStream.default_stream(
dataset,
iteration_scheme=SequentialScheme(num_examples, batch_size))
data_stream = ScaleAndShift(data_stream,
scale=1/data_std,
shift=-data_mean/float(data_std))
# Original sampling rate
data_stream = Resample(data_stream, scale=initial_scale)
data_stream = Mapping(data_stream, _copy, add_sources=('upsampled',))
data_stream = Resample(data_stream, scale=scale, which_sources=('upsampled',))
data_stream = Resample(data_stream, scale=1/scale, which_sources=('upsampled',))
# data_stream = Mapping(data_stream, _downsample_and_upsample,
# add_sources=('upsampled',))
data_stream = Mapping(data_stream, _equalize_size)
data_stream = Mapping(data_stream, _get_residual,
add_sources=('residual',))
data_stream = FilterSources(data_stream,
sources=('upsampled', 'residual',))
data_stream = Mapping(data_stream, _segment_axis)
data_stream = Mapping(data_stream, _transpose)
return data_stream
def test_mapping_sort_multisource(self):
data = OrderedDict([('x', self.data_x), ('y', self.data_y)])
data_sorted = [([1, 2, 3], [6, 5, 4]), ([1, 2, 3], [4, 6, 5]),
([1, 2, 3], [4, 5, 6])]
stream = DataStream(IterableDataset(data))
transformer = Mapping(stream,
mapping=SortMapping(operator.itemgetter(0)))
assert_equal(list(transformer.get_epoch_iterator()), data_sorted)
def test_mapping_dict(self):
def mapping(d):
return {'data': [2 * i for i in d['data']]}
stream = DataStream(IterableDataset(self.data))
transformer = Mapping(stream, mapping, mapping_accepts=dict)
assert_equal(list(transformer.get_epoch_iterator()),
list(zip([[2, 4, 6], [4, 6, 2], [6, 4, 2]])))
def test_mapping_sort_multisource():
data = OrderedDict()
data['x'] = [[1, 2, 3], [2, 3, 1], [3, 2, 1]]
data['y'] = [[6, 5, 4], [6, 5, 4], [6, 5, 4]]
data_sorted = [([1, 2, 3], [6, 5, 4]), ([1, 2, 3], [4, 6, 5]),
([1, 2, 3], [4, 5, 6])]
stream = DataStream(IterableDataset(data))
wrapper = Mapping(stream, mapping=SortMapping(operator.itemgetter(0)))
assert list(wrapper.get_epoch_iterator()) == data_sorted
def get_dev_stream_with_prefixes(val_set=None, val_set_grndtruth=None, src_vocab=None, src_vocab_size=30000,
trg_vocab=None, trg_vocab_size=30000, unk_id=1, return_vocab=False, **kwargs):
"""Setup development set stream if necessary."""
dev_stream = None
if val_set is not None and val_set_grndtruth is not None:
src_vocab = _ensure_special_tokens(
src_vocab if isinstance(src_vocab, dict) else
cPickle.load(open(src_vocab)),
bos_idx=0, eos_idx=src_vocab_size - 1, unk_idx=unk_id)
trg_vocab = _ensure_special_tokens(
trg_vocab if isinstance(trg_vocab, dict) else
cPickle.load(open(trg_vocab)),
bos_idx=0, eos_idx=trg_vocab_size - 1, unk_idx=unk_id)
dev_source_dataset = TextFile([val_set], src_vocab,
bos_token='<S>',
eos_token='</S>',
unk_token='<UNK>')
dev_target_dataset = TextFile([val_set_grndtruth], trg_vocab,
bos_token='<S>',
eos_token='</S>',
unk_token='<UNK>')
dev_stream = Merge([dev_source_dataset.get_example_stream(),
dev_target_dataset.get_example_stream()],
('source', 'target'))
# now add prefix and suffixes to this stream
dev_stream = Mapping(dev_stream, PrefixSuffixStreamTransformer(sample_ratio=kwargs.get('dev_sample_ratio', 1.)),
add_sources=('target_prefix', 'target_suffix'))
dev_stream = Mapping(dev_stream, CopySourceAndTargetToMatchPrefixes(dev_stream))
# changing stream.produces_examples is a little hack which lets us use Unpack to flatten
dev_stream.produces_examples = False
# flatten the stream back out into (source, target, target_prefix, target_suffix)
dev_stream = Unpack(dev_stream)
if return_vocab:
return dev_stream, src_vocab, trg_vocab
else:
return dev_stream