def test_colors(interactive=False):
peak_dirs, peak_vals, peak_affine = generate_peaks()
valid_mask = np.abs(peak_dirs).max(axis=(-2, -1)) > 0
indices = np.nonzero(valid_mask)
scene = window.Scene()
colors = [[1, 0, 0], [1, 0, 0], [1, 0, 0], [0, 1, 0], [0, 0, 1], [0, 0, 1],
[1, 1, 0]]
peak_actor = PeakActor(peak_dirs,
indices,
values=peak_vals,
affine=peak_affine,
colors=colors)
scene.add(peak_actor)
scene.azimuth(30)
scene.reset_camera()
scene.reset_clipping_range()
if interactive:
window.show(scene)
arr = window.snapshot(scene)
report = window.analyze_snapshot(arr, colors=colors)
npt.assert_equal(report.objects, 4)
def test_lookup_colormap(interactive=False):
peak_dirs, peak_vals, peak_affine = generate_peaks()
valid_mask = np.abs(peak_dirs).max(axis=(-2, -1)) > 0
indices = np.nonzero(valid_mask)
scene = window.Scene()
colors = [.0, .1, .2, .5, .8, .9, 1]
hue = (0, 1) # Red to blue
saturation = (0, 1) # White to full saturation
lut_cmap = actor.colormap_lookup_table(hue_range=hue,
saturation_range=saturation)
peak_actor = PeakActor(peak_dirs,
indices,
values=peak_vals,
affine=peak_affine,
colors=colors,
lookup_colormap=lut_cmap)
scene.add(peak_actor)
scene.azimuth(30)
scene.reset_camera()
scene.reset_clipping_range()
if interactive:
window.show(scene)
arr = window.snapshot(scene)
report = window.analyze_snapshot(arr)
npt.assert_equal(report.objects, 4)
def test_global_opacity():
peak_dirs, peak_vals, peak_affine = generate_peaks()
valid_mask = np.abs(peak_dirs).max(axis=(-2, -1)) > 0
indices = np.nonzero(valid_mask)
peak_actor = PeakActor(peak_dirs, indices, values=peak_vals,
affine=peak_affine)
npt.assert_equal(peak_actor.global_opacity, 1)
peak_actor.global_opacity = .5
npt.assert_equal(peak_actor.global_opacity, .5)
peak_actor.global_opacity = 0
npt.assert_equal(peak_actor.global_opacity, 0)
def test_min_centers():
peak_dirs, peak_vals, peak_affine = generate_peaks()
valid_mask = np.abs(peak_dirs).max(axis=(-2, -1)) > 0
indices = np.nonzero(valid_mask)
peak_actor = PeakActor(peak_dirs, indices, values=peak_vals,
affine=peak_affine)
npt.assert_equal(peak_actor.min_centers, [0, 0, 0])
def test_linewidth():
peak_dirs, peak_vals, peak_affine = generate_peaks()
valid_mask = np.abs(peak_dirs).max(axis=(-2, -1)) > 0
indices = np.nonzero(valid_mask)
peak_actor = PeakActor(peak_dirs, indices, values=peak_vals,
affine=peak_affine)
npt.assert_equal(peak_actor.linewidth, 1)
peak_actor.linewidth = 2
npt.assert_equal(peak_actor.linewidth, 2)
peak_actor.linewidth = 5
npt.assert_equal(peak_actor.linewidth, 5)
peak_actor.linewidth = 0
npt.assert_equal(peak_actor.linewidth, 0)
def test_symmetric_param():
dirs000 = np.array([[1, 0, 0], [0, -1, 0]])
dirs001 = np.array([[1, 1, 0], [-1, 1, 0]])
peak_dirs = np.zeros((1, 1, 2, 2, 3))
peak_dirs[0, 0, 0, :, :] = dirs000
peak_dirs[0, 0, 1, :, :] = dirs001
valid_mask = np.abs(peak_dirs).max(axis=(-2, -1)) > 0
indices = np.nonzero(valid_mask)
peak_actor_asym = PeakActor(peak_dirs, indices, symmetric=False)
actor_points = utils.vertices_from_actor(peak_actor_asym)
desired_points = np.array([[0, 0, 0], [1, 0, 0], [0, 0, 0], [0, -1, 0],
[0, 0, 1], [1, 1, 1], [0, 0, 1], [-1, 1, 1]])
npt.assert_array_equal(actor_points, desired_points)
peak_actor_sym = PeakActor(peak_dirs, indices)
actor_points = utils.vertices_from_actor(peak_actor_sym)
desired_points = np.array([[-1, 0, 0], [1, 0, 0], [0, 1, 0], [0, -1, 0],
[-1, -1, 1], [1, 1, 1], [1, -1, 1], [-1, 1, 1]])
npt.assert_array_equal(actor_points, desired_points)
def test_display_cross_section():
peak_dirs, peak_vals, peak_affine = generate_peaks()
valid_mask = np.abs(peak_dirs).max(axis=(-2, -1)) > 0
indices = np.nonzero(valid_mask)
peak_actor = PeakActor(peak_dirs, indices, values=peak_vals,
affine=peak_affine)
peak_actor.display_cross_section(0, 0, 0)
npt.assert_equal(peak_actor.is_range, False)
npt.assert_equal(peak_actor.cross_section, [0, 0, 0])
peak_actor.display_extent(0, 0, 0, 1, 0, 2)
npt.assert_equal(peak_actor.is_range, True)
peak_actor.display_cross_section(0, 0, 0)
npt.assert_equal(peak_actor.is_range, False)