def setUp(self):
self.mutations = fwdpy11.MutationVector()
self.fixations = fwdpy11.MutationVector()
self.haploid_genomes = fwdpy11.HaploidGenomeVector()
self.diploids = fwdpy11.DiploidVector()
self.mutations.append(fwdpy11.Mutation(0.1, -0.01, 1.0, 0, 0))
self.fixations.append(fwdpy11.Mutation(0.1, -0.01, 1.0, 0, 0))
self.haploid_genomes.append(fwdpy11.HaploidGenome(
(2, [], [0])))
self.diploids.append(fwdpy11.DiploidGenotype(0, 0))
def setUp(self):
mutations = fwdpy11.MutationVector()
fixations = fwdpy11.MutationVector()
gametes = fwdpy11.HaploidGenomeVector()
diploids = fwdpy11.DiploidVector()
mutations.append(fwdpy11.Mutation(0.1, -0.01, 1.0, 0, 0))
mutations.append(fwdpy11.Mutation(0.2, 0.0, 1.0, 0, 0))
gametes.append(fwdpy11.HaploidGenome((4, [1], [0])))
diploids.append(fwdpy11.DiploidGenotype(0, 0))
diploids.append(fwdpy11.DiploidGenotype(0, 0))
self.pop = fwdpy11.DiploidPopulation(diploids, gametes, mutations)
def setUp(self):
mutations = fwdpy11.MutationVector()
fixations = fwdpy11.MutationVector()
gametes = fwdpy11.HaploidGenomeVector()
diploids = fwdpy11.DiploidVector()
mutations.append(
fwdpy11.Mutation(0.1, -0.01, 1.0, 0, [-1., 2.], [5., 4.], 0))
fixations.append(
fwdpy11.Mutation(0.1, -0.01, 1.0, 0, [-1., 2.], [5., 4.], 0))
gametes.append(fwdpy11.HaploidGenome((2, [], [0])))
diploids.append(fwdpy11.DiploidGenotype(0, 0))
ftimes = [1]
self.pop = fwdpy11.DiploidPopulation.create(diploids, gametes,
mutations, fixations,
ftimes, 2)
def testMutations(self):
self.assertTrue(isinstance(self.muts, np.ndarray))
self.assertEqual(self.muts.shape[0], len(self.pop.mutations))
for i, j in zip(self.muts, self.pop.mutations):
self.assertEqual(i['neutral'], j.neutral)
self.assertEqual(i['h'], j.h)
self.assertEqual(i['pos'], j.pos)
self.assertEqual(i['g'], j.g)
self.assertEqual(i['s'], j.s)
m = fwdpy11.Mutation(tuple(i)[:-1])
self.assertEqual(m.pos, j.pos)
self.assertEqual(m.s, j.s)
self.assertEqual(m.h, j.h)
self.assertEqual(m.g, j.g)
self.assertEqual(m.label, j.label)
self.assertEqual(m.neutral, j.neutral)
def setUp(self):
self.m = fwdpy11.Mutation(1.0, -1.0, 0.25, 0, [1., 2.],
[-1.0, 1. / 3.], 13)
def setUp(self):
self.m = fwdpy11.Mutation((1.0, -1.0, 0.25, 0, 13))
def setUp(self):
import fwdpy11
self.m = fwdpy11.Mutation(0.1, -0.2, 1.0, 10, 3)
def setUp(self):
self.pop = fwdpy11.DiploidPopulation(1000)
self.mvec = fwdpy11.MutationVector()
self.nmut = fwdpy11.Mutation(0.1, 0.0, 0.0, 0, 0)
self.smut = fwdpy11.Mutation(1.2, -0.01, 0.0, 0, 0)
self.smut_vec = fwdpy11.Mutation(1.3, 0., 0., 0, [-1., 0], [1, 1], 0)