def verify(g_a, g_b):
a = ga.get(g_a)
b = ga.get(g_b)
if not np.all(a[::-1] == b):
print "Mismatch: a[::-1] is not equal to b"
ga.error("verify failed")
print "Transpose OK"
def verify(g_a, g_b):
### copy the entire block of data from the global array "g_a" into the
### local array "a" and similarly for "g_b" and "b".
if not np.all(a[::-1] == b):
print "Mismatch: a[::-1] is not equal to b"
ga.error("verify failed")
print "Transpose OK"
def verify(g_a, g_b):
a = ga.get(g_a)
b = ga.get(g_b)
if not np.all(a[::-1] == b):
print "Mismatch: a[::-1] is not equal to b"
ga.error("verify failed")
print "Transpose OK"
def verify(g_a, g_b):
### copy the entire block of data from the global array "g_a" into the
### local array "a" and similarly for "g_b" and "b".
if not np.all(a[::-1] == b):
print "Mismatch: a[::-1] is not equal to b"
ga.error("verify failed")
print "Transpose OK"
def matrix_multiply():
# Configure array dimensions. Force an unequal data distribution.
dims = [TOTALELEMS] * NDIM
chunk = [TOTALELEMS / nprocs - 1] * NDIM
# Create a global array g_a and duplicate it to get g_b and g_c.
g_a = ga.create(ga.C_DBL, dims, "array A", chunk)
if not g_a: ga.error("create failed: A")
if not me: print "Created Array A"
g_b = ga.duplicate(g_a, "array B")
g_c = ga.duplicate(g_a, "array C")
if not g_b or not g_c: ga.eror("duplicate failed")
if not me: print "Created Arrays B and C"
# Initialize data in matrices a and b.
if not me: print "Initializing matrix A and B"
a = np.random.rand(*dims) * 29
b = np.random.rand(*dims) * 37
# Copy data to global arrays g_a and g_b.
if not me:
ga.put(g_a, a)
ga.put(g_b, b)
# Synchronize all processors to make sure everyone has data.
ga.sync()
# Determine which block of data is locally owned. Note that
# the same block is locally owned for all GAs.
lo, hi = ga.distribution(g_c)
# Get the blocks from g_a and g_b needed to compute this block in
# g_c and copy them into the local buffers a and b.
a = ga.get(g_a, (lo[0], 0), (hi[0], dims[0]))
b = ga.get(g_b, (0, lo[1]), (dims[1], hi[1]))
# Do local matrix multiplication and store the result in local
# buffer c. Start by evaluating the transpose of b.
btrns = b.transpose()
# Multiply a and b to get c.
c = np.dot(a, b)
# Copy c back to g_c.
ga.put(g_c, c, lo, hi)
verify(g_a, g_b, g_c)
# Deallocate arrays.
ga.destroy(g_a)
ga.destroy(g_b)
ga.destroy(g_c)
def matrix_multiply():
# Configure array dimensions. Force an unequal data distribution.
dims = [TOTALELEMS]*NDIM
chunk = [TOTALELEMS/nprocs-1]*NDIM
# Create a global array g_a and duplicate it to get g_b and g_c.
g_a = ga.create(ga.C_DBL, dims, "array A", chunk)
if not g_a: ga.error("create failed: A")
if not me: print "Created Array A"
g_b = ga.duplicate(g_a, "array B")
g_c = ga.duplicate(g_a, "array C")
if not g_b or not g_c: ga.eror("duplicate failed")
if not me: print "Created Arrays B and C"
# Initialize data in matrices a and b.
if not me: print "Initializing matrix A and B"
a = np.random.rand(*dims)*29
b = np.random.rand(*dims)*37
# Copy data to global arrays g_a and g_b.
if not me:
ga.put(g_a, a)
ga.put(g_b, b)
# Synchronize all processors to make sure everyone has data.
ga.sync()
# Determine which block of data is locally owned. Note that
# the same block is locally owned for all GAs.
lo,hi = ga.distribution(g_c)
# Get the blocks from g_a and g_b needed to compute this block in
# g_c and copy them into the local buffers a and b.
a = ga.get(g_a, (lo[0],0), (hi[0],dims[0]))
b = ga.get(g_b, (0,lo[1]), (dims[1],hi[1]))
# Do local matrix multiplication and store the result in local
# buffer c. Start by evaluating the transpose of b.
btrns = b.transpose()
# Multiply a and b to get c.
c = np.dot(a,b)
# Copy c back to g_c.
ga.put(g_c, c, lo, hi)
verify(g_a, g_b, g_c)
# Deallocate arrays.
ga.destroy(g_a)
ga.destroy(g_b)
ga.destroy(g_c)
def TRANSPOSE1D():
# Configure array dimensions. Force an unequal data distribution.
dims = [nprocs * TOTALELEMS + nprocs / 2]
chunk = [TOTALELEMS] # minimum data on each process
# create a global array g_a and duplicate it to get g_b
### create GA of integers with dimension "dims" with minimum block size
### "chunk" and name of "Array A" and assign the handle to the variable
### "g_a"
if not g_a: ga.error("create failed: A")
if not me: print "Created Array A"
### create a second global array assigned to the handled "g_b" by
### duplicating "g_a" and assigning the name "Array B"
if not g_b: ga.error("duplicate failed")
if not me: print "Created Array B"
# initialize data in g_a
if not me:
print "Initializing matrix A"
### copy contents of a numpy range array into the remote
### global array "g_a"
### HINT: use numpy's arange() e.g. np.arange(###, dtype=np.int32)
# Synchronize all processors to guarantee that everyone has data
# before proceeding to the next step.
### synchronize all processors
# Start initial phase of inversion by inverting the data held locally on
# each processor. Start by finding out which data each processor owns.
### find out which block of data my node owns for the global array "g_a"
### and store the contents of the arrays into "lo" and "hi"
# Get locally held data and copy it into local buffer a
### use the arrays "lo" and "hi" to copy the locally held block of data
### from the global array "g_a" into the local array "a".
# Invert data locally
b = a[::-1]
# Invert data globally by copying locally inverted blocks into
# their inverted positions in the GA
lo2 = [dims[0] - hi[0]]
hi2 = [dims[0] - lo[0]]
### copy data from the local array "b" into the block of the global
### array "g_a" described by the integer arrays "lo" and "hi"
# Synchronize all processors to make sure inversion is complete
### synchronize all processors
# Check to see if inversion is correct
if not me: verify(g_a, g_b)
def TRANSPOSE1D():
# Configure array dimensions. Force an unequal data distribution.
dims = [nprocs*TOTALELEMS + nprocs/2]
chunk = [TOTALELEMS] # minimum data on each process
# create a global array g_a and duplicate it to get g_b
### create GA of integers with dimension "dims" with minimum block size
### "chunk" and name of "Array A" and assign the handle to the variable
### "g_a"
if not g_a: ga.error("create failed: A")
if not me: print "Created Array A"
### create a second global array assigned to the handled "g_b" by
### duplicating "g_a" and assigning the name "Array B"
if not g_b: ga.error("duplicate failed")
if not me: print "Created Array B"
# initialize data in g_a
if not me:
print "Initializing matrix A"
### copy contents of a numpy range array into the remote
### global array "g_a"
### HINT: use numpy's arange() e.g. np.arange(###, dtype=np.int32)
# Synchronize all processors to guarantee that everyone has data
# before proceeding to the next step.
### synchronize all processors
# Start initial phase of inversion by inverting the data held locally on
# each processor. Start by finding out which data each processor owns.
### find out which block of data my node owns for the global array "g_a"
### and store the contents of the arrays into "lo" and "hi"
# Get locally held data and copy it into local buffer a
### use the arrays "lo" and "hi" to copy the locally held block of data
### from the global array "g_a" into the local array "a".
# Invert data locally
b = a[::-1]
# Invert data globally by copying locally inverted blocks into
# their inverted positions in the GA
lo2 = [dims[0]-hi[0]]
hi2 = [dims[0]-lo[0]]
### copy data from the local array "b" into the block of the global
### array "g_a" described by the integer arrays "lo" and "hi"
# Synchronize all processors to make sure inversion is complete
### synchronize all processors
# Check to see if inversion is correct
if not me: verify(g_a, g_b)
def TRANSPOSE1D():
# Configure array dimensions. Force an unequal data distribution.
dims = [nprocs * TOTALELEMS + nprocs / 2]
chunk = [TOTALELEMS] # minimum data on each process
# create a global array g_a and duplicate it to get g_b
g_a = ga.create(ga.C_INT, dims, "array A", chunk)
if not g_a: ga.error("create failed: A")
if not me: print "Created Array A"
g_b = ga.duplicate(g_a, "array B")
if not g_b: ga.error("duplicate failed")
if not me: print "Created Array B"
# initialize data in g_a
if not me:
print "Initializing matrix A"
ga.put(g_a, np.arange(dims[0], dtype=np.int32))
# Synchronize all processors to guarantee that everyone has data
# before proceeding to the next step.
ga.sync()
# Start initial phase of inversion by inverting the data held locally on
# each processor. Start by finding out which data each processor owns.
lo, hi = ga.distribution(g_a)
# Get locally held data and copy it into local buffer a
a = ga.get(g_a, lo, hi)
# Invert data locally
b = a[::-1]
# Invert data globally by copying locally inverted blocks into
# their inverted positions in the GA
ga.put(g_b, b, dims[0] - hi[0], dims[0] - lo[0])
# Synchronize all processors to make sure inversion is complete
ga.sync()
# Check to see if inversion is correct
if not me: verify(g_a, g_b)
# Deallocate arrays
ga.destroy(g_a)
ga.destroy(g_b)
def TRANSPOSE1D():
# Configure array dimensions. Force an unequal data distribution.
dims = [nprocs*TOTALELEMS + nprocs/2]
chunk = [TOTALELEMS] # minimum data on each process
# create a global array g_a and duplicate it to get g_b
g_a = ga.create(ga.C_INT, dims, "array A", chunk)
if not g_a: ga.error("create failed: A")
if not me: print "Created Array A"
g_b = ga.duplicate(g_a, "array B")
if not g_b: ga.error("duplicate failed")
if not me: print "Created Array B"
# initialize data in g_a
if not me:
print "Initializing matrix A"
ga.put(g_a, np.arange(dims[0], dtype=np.int32))
# Synchronize all processors to guarantee that everyone has data
# before proceeding to the next step.
ga.sync()
# Start initial phase of inversion by inverting the data held locally on
# each processor. Start by finding out which data each processor owns.
lo,hi = ga.distribution(g_a)
# Get locally held data and copy it into local buffer a
a = ga.get(g_a, lo, hi)
# Invert data locally
b = a[::-1]
# Invert data globally by copying locally inverted blocks into
# their inverted positions in the GA
ga.put(g_b, b, dims[0]-hi[0], dims[0]-lo[0])
# Synchronize all processors to make sure inversion is complete
ga.sync()
# Check to see if inversion is correct
if not me: verify(g_a, g_b)
# Deallocate arrays
ga.destroy(g_a)
ga.destroy(g_b)
def verify(g_a, g_b, g_c):
g_chk = ga.duplicate(g_a, "array check")
if not g_chk: ga.error("duplicate failed")
ga.sync()
ga.gemm(False, False, TOTALELEMS, TOTALELEMS, TOTALELEMS, 1.0, g_a, g_b,
0.0, g_chk)
ga.sync()
ga.add(g_c, g_chk, g_chk, 1.0, -1.0)
rchk = ga.dot(g_chk, g_chk)
if not me:
print "Normed difference in matrices: %12.4f" % rchk
if not (-TOLERANCE < rchk < TOLERANCE):
ga.error("Matrix multiply verify failed")
else:
print "Matrix Multiply OK"
ga.destroy(g_chk)
def verify(g_a, g_b, g_c):
g_chk = ga.duplicate(g_a, "array check")
if not g_chk: ga.error("duplicate failed")
ga.sync()
ga.gemm(False, False, TOTALELEMS, TOTALELEMS, TOTALELEMS, 1.0, g_a, g_b,
0.0, g_chk);
ga.sync()
ga.add(g_c, g_chk, g_chk, 1.0, -1.0)
rchk = ga.dot(g_chk, g_chk)
if not me:
print "Normed difference in matrices: %12.4f" % rchk
if not (-TOLERANCE < rchk < TOLERANCE):
ga.error("Matrix multiply verify failed")
else:
print "Matrix Multiply OK"
ga.destroy(g_chk)
def matrix_multiply():
# Configure array dimensions. Force an unequal data distribution.
dims = [TOTALELEMS]*NDIM
chunk = [TOTALELEMS/nprocs-1]*NDIM
# Create a global array g_a and duplicate it to get g_b and g_c.
### create GA of doubles with dimensions "dims", with minimum block size
### "chunk", and with name "array A", and assign the handle to the integer
### variable "g_a".
if not g_a: ga.error("create failed: A")
if not me: print "Created Array A"
### Duplicate array "g_a" to create arrays "g_b" and "g_c" with array
### names "array B" and "array C", respectively.
if not g_b or not g_c: ga.eror("duplicate failed")
if not me: print "Created Arrays B and C"
# Initialize data in matrices a and b.
if not me: print "Initializing matrix A and B"
a = np.random.rand(*dims)*29
b = np.random.rand(*dims)*37
# Copy data to global arrays g_a and g_b.
if not me:
### copy the contents of array "a" into the global array "g_a"
### similarly for "b"
# Synchronize all processors to make sure everyone has data.
### Synchronize all processors
# Determine which block of data is locally owned. Note that
# the same block is locally owned for all GAs.
### find out which block of data my node owns for the global array "g_c"
### and store the contents in the integer arrays "lo" and "hi"
# Get the blocks from g_a and g_b needed to compute this block in
# g_c and copy them into the local buffers a and b.
lo2 = (lo[0],0)
hi2 = (hi[0],dims[0]))
### copy the block of data described by the arrays "lo2" and "hi2" from
### the global array "g_a" in to the local array "a"
lo3 = (0,lo[1])
hi3 = (dims[1],hi[1]))
### copy the block of data described by the arrays "lo3" and "hi3" from
### the global array "g_b" in to the local array "b"
# Do local matrix multiplication and store the result in local
# buffer c. Start by evaluating the transpose of b.
btrns = b.transpose()
# Multiply a and b to get c.
c = np.dot(a,b)
# Copy c back to g_c.
### copy data from the local array "c" into the block of the global array
### "g_c" described by the integer arrays "lo" and "hi".
verify(g_a, g_b, g_c)
# Deallocate arrays.
### destroy the global arrays "g_a", "g_b", "g_c"
if __name__ == '__main__':
if not me: print "\nUsing %d processes\n" % nprocs
matrix_multiply()
if not me: print "\nTerminating..."
import mpi4py.MPI # initialize Message Passing Interface
import ga # initialize Global Arrays
import numpy as np
me = ga.nodeid()
nproc = ga.nnodes()
def print_distribution(g_a):
for i in range(ga.nnodes()):
lo,hi = ga.distribution(g_a, i)
print "P=%s lo=%s hi=%s" % (i,lo,hi)
# create some irregular arrays
block = [3,2]
map = [0,2,6,0,5]
if nproc < np.prod(block):
raise ValueError, "ERROR: fewer procs than requested blocks"
g_a = ga.create_irreg(ga.C_DBL, [8,10], block, map, "Array A")
if not g_a:
ga.error("Could not create global array A",g_a)
g_b = ga.create(ga.C_INT, (2,3,4,5,6))
if not me:
print_distribution(g_a)
print_distribution(g_b)