import pkg_resources
pkg_resources.require("SQLAlchemy")
pkg_resources.require("decorator")
pkg_resources.require("Tempita ")
pkg_resources.require("sqlalchemy-migrate")
from migrate.versioning.shell import main
from ConfigParser import SafeConfigParser
from galaxy.model.orm.scripts import require_dialect_egg
from galaxy.model.orm.scripts import read_config_file_arg
log = logging.getLogger(__name__)
config_file = read_config_file_arg(sys.argv, 'universe_wsgi.ini')
if not os.path.exists(config_file):
print "Galaxy config file does not exist (hint: use '-c config.ini' for non-standard locations): %s" % config_file
sys.exit(1)
repo = 'lib/tool_shed/galaxy_install/migrate'
cp = SafeConfigParser()
cp.read(config_file)
if config_file == 'universe_wsgi.ini.sample' and 'GALAXY_TEST_DBURI' in os.environ:
# Running functional tests.
db_url = os.environ['GALAXY_TEST_DBURI']
elif cp.has_option("app:main", "install_database_connection"):
db_url = cp.get("app:main", "install_database_connection")
elif cp.has_option("app:main", "database_connection"):
db_url = cp.get("app:main", "database_connection")
import logging
import os.path
import sys
from ConfigParser import SafeConfigParser
from migrate.versioning.shell import main
sys.path.insert(1, os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, 'lib')))
from galaxy.model.orm.scripts import read_config_file_arg
from galaxy.util.properties import load_app_properties
log = logging.getLogger( __name__ )
config_file = read_config_file_arg( sys.argv, 'config/galaxy.ini', 'universe_wsgi.ini' )
if not os.path.exists( config_file ):
print "Galaxy config file does not exist (hint: use '-c config.ini' for non-standard locations): %s" % config_file
sys.exit( 1 )
repo = 'lib/tool_shed/galaxy_install/migrate'
properties = load_app_properties( ini_file=config_file )
cp = SafeConfigParser()
cp.read( config_file )
if config_file == 'config/galaxy.ini.sample' and 'GALAXY_TEST_DBURI' in os.environ:
# Running functional tests.
db_url = os.environ[ 'GALAXY_TEST_DBURI' ]
elif "install_database_connection" in properties:
db_url = properties[ "install_database_connection" ]
elif "database_connection" in properties:
db_url = properties[ "database_connection" ]
import pkg_resources
pkg_resources.require( "SQLAlchemy" )
pkg_resources.require( "decorator" )
pkg_resources.require( "Tempita " )
pkg_resources.require( "sqlalchemy-migrate" )
from migrate.versioning.shell import main
from ConfigParser import SafeConfigParser
from galaxy.model.orm.scripts import require_dialect_egg
from galaxy.model.orm.scripts import read_config_file_arg
log = logging.getLogger( __name__ )
config_file = read_config_file_arg( sys.argv, 'universe_wsgi.ini' )
if not os.path.exists( config_file ):
print "Galaxy config file does not exist (hint: use '-c config.ini' for non-standard locations): %s" % config_file
sys.exit( 1 )
repo = 'lib/tool_shed/galaxy_install/migrate'
cp = SafeConfigParser()
cp.read( config_file )
if config_file == 'universe_wsgi.ini.sample' and 'GALAXY_TEST_DBURI' in os.environ:
# Running functional tests.
db_url = os.environ[ 'GALAXY_TEST_DBURI' ]
elif cp.has_option( "app:main", "install_database_connection" ):
db_url = cp.get( "app:main", "install_database_connection" )
elif cp.has_option( "app:main", "database_connection" ):
db_url = cp.get( "app:main", "database_connection" )
