def setUp(self):
self.setup_app()
job = Job()
job.id = 345
job.tool_id = TEST_TOOL_ID
job.user = User()
self.model_objects = {Job: {345: job}}
self.app.model.context = MockContext(self.model_objects)
self.app.toolbox = MockToolbox(MockTool(self))
self.working_directory = os.path.join(self.test_directory, "working")
self.app.object_store = MockObjectStore(self.working_directory)
self.queue = MockJobQueue(self.app)
self.job = job
def setUp(self):
self.setup_app()
job = Job()
job.id = 345
job.tool_id = TEST_TOOL_ID
job.user = User()
self.model_objects = {Job: {345: job}}
self.app.model.context = MockContext(self.model_objects)
self.app.toolbox = MockToolbox(MockTool(self))
self.working_directory = os.path.join(self.test_directory, "working")
self.app.object_store = MockObjectStore(self.working_directory)
self.queue = MockJobQueue(self.app)
self.job = job
def setUp(self):
self.setup_app()
self.tool = MockTool(self.app)
self.job = Job()
self.job.history = History()
self.job.parameters = [JobParameter(name="thresh", value="4")]
self.evaluator = ToolEvaluator(self.app, self.tool, self.job, self.test_directory)
def setUp(self):
self.tool = Bunch(
stdio_regexes=[],
stdio_exit_codes=[],
)
self.job = Job()
self.job.id = "test_id"
self.stdout = ''
self.stderr = ''
self.tool_exit_code = None
def job(app: FileSourcesMockApp) -> Job:
job = Job()
app.model.session.add(job)
app.model.session.flush()
return job