def __init__(self,
app,
template_cache_dir=None,
directories_setting=None,
skip_bad_plugins=True,
**kwargs):
"""
Set up the manager and load all visualization plugins.
:type app: galaxy.app.UniverseApplication
:param app: the application (and its configuration) using this manager
:type base_url: string
:param base_url: url to prefix all plugin urls with
:type template_cache_dir: string
:param template_cache_dir: filesytem path to the directory where cached
templates are kept
"""
self.app = weakref.ref(app)
self.config_parser = config_parser.VisualizationsConfigParser()
self.base_url = self.BASE_URL
self.template_cache_dir = template_cache_dir
self.additional_template_paths = []
self.directories = []
self.skip_bad_plugins = skip_bad_plugins
self.plugins = {}
self.directories = config_directories_from_setting(
directories_setting, app.config.root)
self._load_configuration()
self._load_plugins()
def __init__(self,
app,
directories_setting=None,
skip_bad_plugins=True,
**kwargs):
"""
Set up the manager and load all plugins.
:type app: UniverseApplication
:param app: the application (and its configuration) using this manager
:type directories_setting: string (default: None)
:param directories_setting: the filesystem path (or paths)
to search for plugins. Can be CSV string of paths. Will be treated as
absolute if a path starts with '/', relative otherwise.
:type skip_bad_plugins: boolean (default: True)
:param skip_bad_plugins: whether to skip plugins that cause
exceptions when loaded or to raise that exception
"""
self.directories = []
self.skip_bad_plugins = skip_bad_plugins
self.plugins = odict.odict()
self.directories = util.config_directories_from_setting(
directories_setting, app.config.root)
self.load_configuration()
self.load_plugins()
def __init__(self, webhooks_dirs):
self.webhooks = []
self.webhooks_directories = []
for webhook_dir in config_directories_from_setting(webhooks_dirs):
for plugin_dir in os.listdir(webhook_dir):
path = os.path.join(webhook_dir, plugin_dir)
if os.path.isdir(path):
self.webhooks_directories.append(path)
self.load_webhooks()
def __init__(self, webhooks_dirs):
self.webhooks = []
self.webhooks_directories = []
for webhook_dir in config_directories_from_setting(webhooks_dirs):
for plugin_dir in os.listdir(webhook_dir):
path = os.path.join(webhook_dir, plugin_dir)
if os.path.isdir(path):
self.webhooks_directories.append(path)
self.load_webhooks()
def __init__(self, app, directories_setting=None, skip_bad_plugins=True, **kwargs):
"""
Set up the manager and load all plugins.
:type app: UniverseApplication
:param app: the application (and its configuration) using this manager
:type directories_setting: string (default: None)
:param directories_setting: the filesystem path (or paths)
to search for plugins. Can be CSV string of paths. Will be treated as
absolute if a path starts with '/', relative otherwise.
:type skip_bad_plugins: boolean (default: True)
:param skip_bad_plugins: whether to skip plugins that cause
exceptions when loaded or to raise that exception
"""
self.directories = []
self.skip_bad_plugins = skip_bad_plugins
self.plugins = odict.odict()
self.directories = util.config_directories_from_setting(directories_setting, app.config.root)
self.load_configuration()
self.load_plugins()
def __init__(self, app, template_cache_dir=None, directories_setting=None, skip_bad_plugins=True, **kwargs):
"""
Set up the manager and load all visualization plugins.
:type app: UniverseApplication
:param app: the application (and its configuration) using this manager
:type base_url: string
:param base_url: url to prefix all plugin urls with
:type template_cache_dir: string
:param template_cache_dir: filesytem path to the directory where cached
templates are kept
"""
self.app = weakref.ref(app)
self.config_parser = config_parser.VisualizationsConfigParser()
self.base_url = self.BASE_URL
self.template_cache_dir = template_cache_dir
self.additional_template_paths = []
self.directories = []
self.skip_bad_plugins = skip_bad_plugins
self.plugins = odict.odict()
self.directories = config_directories_from_setting(directories_setting, app.config.root)
self._load_configuration()
self._load_plugins()
def __init__(self, tour_directories):
self.tour_directories = util.config_directories_from_setting(
tour_directories)
self.load_tours()
def __init__(self, tour_directories):
self.tour_directories = config_directories_from_setting(
tour_directories)
self._extensions = ('.yml', '.yaml')
self._load_tours()
def __init__(self, tour_directories):
self.tour_directories = util.config_directories_from_setting( tour_directories )
self.load_tours()
def __init__(self, view_directories=None, view_dicts=None):
self.view_directories = config_directories_from_setting(
view_directories) or []
self.view_dicts = view_dicts or []
