def generate(n=5):
projects = []
for i in range(1, n):
name = random.choice(project_names) % i
info = 'some info=%s' % i
project = authorize.create_project(user=user, name=name, info=info)
projects.append(project)
logger.info('creating %s' % name)
# data names
data_names = ('short-good-input.gtrack', 'short-data.bed')
# visualization names
track_names = ('differential expression', 'HELA subtract', 'Default track')
# a subset of projects get data, visualization and results added to them
subset = projects[-1:]
for project in subset:
# create some tracks for this project
for tname in track_names:
json = dict()
track = authorize.create_track(user=user,
pid=project.id,
name=tname,
json=json)
logger.info('creating track %s' % track.name)
assert (project.track_count(), len(track_names))
# upload some data names
for name in data_names:
logger.info('uploading data %s' % name)
stream = File(open(conf.testdata(name)))
data = authorize.create_data(user=user,
pid=project.id,
stream=stream,
name=name,
info='test data')
# create some results
logger.info('adding results content and image')
stream1 = File(open(conf.testdata('short-results.txt')))
image1 = File(open(conf.testdata('readcounts.png'), 'rb'))
result1 = authorize.create_result(user=user,
data=data,
content=stream1,
image=image1)
image2 = File(open(conf.testdata('shift.png'), 'rb'))
result2 = authorize.create_result(user=user,
data=data,
content=None,
image=image2)
def generate(n=5):
projects = []
for i in range(1, n):
name = random.choice(project_names) % i
info = 'some info=%s' % i
project = authorize.create_project(user=user, name=name, info=info)
projects.append(project)
logger.info('creating %s' % name)
# data names
data_names = ( 'short-good-input.gtrack', 'short-data.bed')
# visualization names
track_names = ( 'differential expression', 'HELA subtract', 'Default track')
# a subset of projects get data, visualization and results added to them
subset = projects[-1:]
for project in subset:
# create some tracks for this project
for tname in track_names:
json = dict()
track = authorize.create_track(user=user, pid=project.id, name=tname, json=json )
logger.info('creating track %s' % track.name)
assert (project.track_count(), len(track_names))
# upload some data names
for name in data_names:
logger.info('uploading data %s' % name)
stream = File( open(conf.testdata(name)) )
data = authorize.create_data(user=user, pid=project.id, stream=stream, name=name, info='test data')
# create some results
logger.info('adding results content and image')
stream1 = File( open(conf.testdata('short-results.txt')) )
image1 = File( open(conf.testdata('readcounts.png'),'rb') )
result1 = authorize.create_result( user=user, data=data, content=stream1, image=image1)
image2 = File( open(conf.testdata('shift.png'), 'rb') )
result2 = authorize.create_result( user=user, data=data, content=None, image=image2)
def result_upload(request, did):
"Uploads a result"
user = request.user
data = authorize.get_data(user=user, did=did)
project = authorize.get_project(user=user, pid=data.project.id, write=False)
# no submission, default page
if 'submit' not in request.POST:
form = ResultForm()
return html.template( request=request, name='result-upload.html', data=data, form=form )
# actual form submission
form = ResultForm( request.POST, request.FILES )
if form.is_valid():
get = form.cleaned_data.get
authorize.create_result(user=user, data=data, content=get('content'), image=get('image'))
return html.redirect("/data/details/%s/" % data.id)
else:
# error messages will be generated
user.message_set.create(message="Some form fields could NOT be validated.")
return html.template( request=request, name='result-upload.html', data=data, form=form )
