def cdtFromPSLG(pslg, onlyInner = False):
"""cdtFromPSLG(pslg, onlyInner) -> GeoMap
Return a CDT for the given planar straight line graph. `pslg`
should be a GeoMap whose node positions are simple input points
and edges define constraint segments.
FIXME: ATM, this function may crash if the input contains
duplicate points (e.g. within the same edge). This is due to a
limitation of the triangle module, i.e. J. Shewchuck's code.
"""
# return constrainedDelaunayMap(
# list(pslg.edgeIter()), pslg.imageSize(),
# [node.position() for node in pslg.nodeIter() if node.isIsolated()],
# onlyInner = False)
points = []
segments = []
holes = []
nodes = [None] * pslg.maxNodeLabel()
for node in pslg.nodeIter():
nodes[node.label()] = len(points)
points.append(node.position())
for edge in pslg.edgeIter():
l = len(points)
edgeSegments = [(l+i-1, l+i) for i in range(len(edge)-1)]
edgeSegments[0] = (nodes[edge.startNodeLabel()], edgeSegments[0][1])
edgeSegments[-1] = (edgeSegments[-1][0], nodes[edge.endNodeLabel()])
points.extend(edge[1:-1])
# for i in range(1, len(edge)-1):
# assert edge[i] not in points, "%s[%d] = ..%s,%s,%s,.. is already present!" % (
# edge, i, edge[i-1], edge[i], edge[i+1])
# points.append(edge[i])
segments.extend(edgeSegments)
for face in pslg.faceIter(skipInfinite = True):
if face.flag(OUTER_FACE):
# FIXME: re-use available scanlines for face:
holes.append(_pointInHole(contourPoly(face.contour())))
print "- performing Constrained Delaunay Triangulation..."
print " (%d points, %s segments, %d holes)" % (
len(points), len(segments), len(holes))
nodePositions, edgeData = triangle.constrainedDelaunay(
points, segments, onlyInner, holes)
print "- storing result in a GeoMap..."
result = _delaunayMapFromData(nodePositions, edgeData, pslg.imageSize())
for edge in result.edgeIter():
if edgeData[edge.label()][2]:
edge.setFlag(CONTOUR_SEGMENT)
result.face(0).setFlag(OUTER_FACE)
for holePoint in holes:
result.faceAt(holePoint).setFlag(OUTER_FACE)
return result
def cdtFromPSLG(pslg, onlyInner = False):
"""cdtFromPSLG(pslg, onlyInner) -> GeoMap
Return a CDT for the given planar straight line graph. `pslg`
should be a GeoMap whose node positions are simple input points
and edges define constraint segments.
FIXME: ATM, this function may crash if the input contains
duplicate points (e.g. within the same edge). This is due to a
limitation of the triangle module, i.e. J. Shewchuck's code.
"""
# return constrainedDelaunayMap(
# list(pslg.edgeIter()), pslg.imageSize(),
# [node.position() for node in pslg.nodeIter() if node.isIsolated()],
# onlyInner = False)
points = []
segments = []
holes = []
nodes = [None] * pslg.maxNodeLabel()
for node in pslg.nodeIter():
nodes[node.label()] = len(points)
points.append(node.position())
for edge in pslg.edgeIter():
l = len(points)
edgeSegments = [(l+i-1, l+i) for i in range(len(edge)-1)]
edgeSegments[0] = (nodes[edge.startNodeLabel()], edgeSegments[0][1])
edgeSegments[-1] = (edgeSegments[-1][0], nodes[edge.endNodeLabel()])
points.extend(edge[1:-1])
# for i in range(1, len(edge)-1):
# assert edge[i] not in points, "%s[%d] = ..%s,%s,%s,.. is already present!" % (
# edge, i, edge[i-1], edge[i], edge[i+1])
# points.append(edge[i])
segments.extend(edgeSegments)
for face in pslg.faceIter(skipInfinite = True):
if face.flag(OUTER_FACE):
# FIXME: re-use available scanlines for face:
holes.append(_pointInHole(contourPoly(face.contour())))
print "- performing Constrained Delaunay Triangulation..."
print " (%d points, %s segments, %d holes)" % (
len(points), len(segments), len(holes))
nodePositions, edgeData = triangle.constrainedDelaunay(
points, segments, onlyInner, holes)
print "- storing result in a GeoMap..."
result = _delaunayMapFromData(nodePositions, edgeData, pslg.imageSize())
for edge in result.edgeIter():
if edgeData[edge.label()][2]:
edge.setFlag(CONTOUR_SEGMENT)
result.face(0).setFlag(OUTER_FACE)
for holePoint in holes:
result.faceAt(holePoint).setFlag(OUTER_FACE)
return result
def faceCDTMap(face, imageSize,
simplifyEpsilon = None,
resample = None,
onlyInner = True):
"""USAGE: dlm = faceCDTMap(face, mapSize)
`face` should be a GeoMap.Face object, and all its contours will
be extracted. `mapSize` is used to initialize the GeoMap with the
resulting edges.
Optional keyword parameters:
simplifyEpsilon
If given, each contour polygon is simplified by calling
simplifyPolygon with this epsilon as parameter (default None ->
don't use simplifyPolygon).
markContour
If True(default), the point list is expected to be a sorted
list, and edges between successive entries are marked as contour
edges (an exception is raised if such a connection is
missing). A `jumpPoints` list is used to mark multiple
contours.
onlyInner
If True(default), all edges outside (left) of the marked contour
are removed in a post-processing step. (This has no effect if
`markContour` is False.)"""
polygons = [contourPoly(c) for c in face.contours()]
if resample:
polygons = [geomap.resamplePolygon(p, resample) for p in polygons]
if simplifyEpsilon != None:
polygons = [geomap.simplifyPolygon(p, simplifyEpsilon) for p in polygons]
if triangle:
result = constrainedDelaunayMap(polygons, imageSize)
else:
result = fakedConstrainedDelaunayMap(polygons, imageSize)
return result
def faceCDTMap(face, imageSize,
simplifyEpsilon = None,
resample = None,
onlyInner = True):
"""USAGE: dlm = faceCDTMap(face, mapSize)
`face` should be a GeoMap.Face object, and all its contours will
be extracted. `mapSize` is used to initialize the GeoMap with the
resulting edges.
Optional keyword parameters:
simplifyEpsilon
If given, each contour polygon is simplified by calling
simplifyPolygon with this epsilon as parameter (default None ->
don't use simplifyPolygon).
markContour
If True(default), the point list is expected to be a sorted
list, and edges between successive entries are marked as contour
edges (an exception is raised if such a connection is
missing). A `jumpPoints` list is used to mark multiple
contours.
onlyInner
If True(default), all edges outside (left) of the marked contour
are removed in a post-processing step. (This has no effect if
`markContour` is False.)"""
polygons = [contourPoly(c) for c in face.contours()]
if resample:
polygons = [geomap.resamplePolygon(p, resample) for p in polygons]
if simplifyEpsilon != None:
polygons = [geomap.simplifyPolygon(p, simplifyEpsilon) for p in polygons]
if triangle:
result = constrainedDelaunayMap(polygons, imageSize)
else:
result = fakedConstrainedDelaunayMap(polygons, imageSize)
return result
def addMapFaces(self,
geomap,
faceMeans=None,
similarity=None,
returnFaces=False,
container=True,
**attr):
"""fe.addMapFaces(geomap, faceMeans, ...)
Adds and returns fig.Polygons for all map faces (or -parts,
see addClippedPoly). Clipping closed polygons should work
nowadays, too."""
import maputils
def getGray(face):
faceColor = faceMeans[face.label()]
return self.f.gray(int(faceColor))
def getRGB(face):
faceColor = faceMeans[face.label()]
return self.f.getColor(map(int, tuple(faceColor)), similarity)
if not faceMeans:
if not hasattr(geomap, "faceMeans"):
raise ValueError(
"addMapFaces: need faceMeans for proper coloring")
faceMeans = geomap.faceMeans
if hasattr(faceMeans, "bands"):
getFaceColor = getGray
if faceMeans.bands() == 3:
getFaceColor = getRGB
else:
getFaceColor = lambda face: faceMeans[face.label()]
if container == True:
container = self.f
attr = dict(attr)
attr["lineWidth"] = attr.get("lineWidth", 0)
attr["fillStyle"] = attr.get("fillStyle", fig.FillStyle.Solid)
compound = fig.Compound(container)
if returnFaces:
result = []
else:
result = compound
todo = [geomap.face(0)]
# +1 because the first iteration will not add any objects:
currentDepth = attr.get("depth", 100) + 1
while todo:
thisLayer = todo
todo = []
for face in thisLayer:
if face.area() > 0:
color = getFaceColor(face)
if color is not None:
thisattr = dict(attr)
thisattr["fillColor"] = getFaceColor(face)
thisattr["depth"] = currentDepth
parts = self.addClippedPoly(contourPoly(
face.contour()),
container=compound,
**thisattr)
if returnFaces:
result.extend([(face, part) for part in parts])
for anchor in face.holeContours():
todo.extend(maputils.holeComponent(anchor))
currentDepth -= 1
return result
def addMapOverlay(fe, overlay, skipBorder=False, **attr):
qtColor2figColor = figexport.qtColor2figColor
# FIXME: str(type(overlay)).contains(...) instead?
if isinstance(overlay, ROISelector):
color = qtColor2figColor(overlay.color, fe.f)
return fe.addROIRect(overlay.roi, penColor=color, **attr)
elif isinstance(overlay, (MapNodes, MapEdges, MapFaces)):
oldScale, oldOffset, oldROI = fe.scale, fe.offset, fe.roi
if isinstance(overlay, MapFaces):
zoom = overlay.edgeOverlay._zoom
else:
zoom = overlay._zoom
extraZoom = float(zoom) / overlay.viewer.zoomFactor()
fe.scale *= extraZoom
fe.roi = BoundingBox(fe.roi.begin() / extraZoom,
fe.roi.end() / extraZoom)
map = overlay._map()
if isinstance(overlay, MapNodes):
radius = overlay.origRadius
if not overlay.relativeRadius:
radius /= float(overlay._zoom)
color = qtColor2figColor(overlay.color, fe.f)
result = fe.addMapNodes(map,
radius,
fillColor=color,
lineWidth=0,
**attr)
elif isinstance(overlay, MapEdges):
attr = dict(attr)
if overlay.width:
attr["lineWidth"] = overlay.width
if overlay.colors:
result = fig.Compound(fe.f)
for edge in map.edgeIter():
edgeColor = overlay.colors[edge.label()]
if edgeColor:
fe.addClippedPoly(edge,
penColor=qtColor2figColor(
edgeColor, fe.f),
container=result,
**attr)
elif overlay.color:
result = fe.addMapEdges(map,
skipBorder=skipBorder,
penColor=qtColor2figColor(
overlay.color, fe.f),
**attr)
else:
result = fig.Compound(fe.f)
if overlay.protectedColor:
attr["penColor"] = \
qtColor2figColor(overlay.protectedColor, fe.f)
attr["lineWidth"] = overlay.protectedWidth or overlay.width
it = skipBorder and maputils.nonBorderEdges(map) \
or map.edgeIter()
for edge in it:
if edge.flag(flag_constants.ALL_PROTECTION):
fe.addClippedPoly(edge, container=result, **attr)
else: # isinstance(overlay, MapFaces)
attr = dict(attr)
if overlay.color:
if overlay.width:
attr["lineWidth"] = overlay.width
attr["penColor"] = qtColor2figColor(overlay.color, fe.f)
if overlay.fillColor:
attr["fillColor"] = qtColor2figColor(overlay.fillColor, fe.f)
attr["fillStyle"] = fig.FillStyle.Solid
result = fig.Compound(fe.f)
for face in map.faceIter():
if face.flag(overlay.flags):
if face.holeCount:
assert not overlay.fillColor or not overlay.color, "FIXME: cannot currently export filled+stroked polygons with holes"
if not overlay.color:
wholePoly = list(contourPoly(face.contour()))
back = wholePoly[0]
assert wholePoly[-1] == back
for dart in face.holeContours():
wholePoly.extend(contourPoly(dart))
wholePoly.append(back)
fe.addClippedPoly(wholePoly, container=result, **attr)
else:
for dart in face.contours():
fe.addClippedPoly(contourPoly(dart),
container=result,
**attr)
fe.scale, fe.offset, fe.roi = oldScale, oldOffset, oldROI
return result
else:
return figexport.addStandardOverlay(fe, overlay, **attr)
# which ATM leads to overlapping edges after border closing. That
# violates some assumptions and would lead to errors if we actually
# worked with that Map.
map = GeoMap(maxima2, [], Size2D(39, 39))
maputils.addFlowLinesToMap(flowlines2, map)
assert map.checkConsistency(), "graph inconsistent"
map.sortEdgesEventually(stepDist = 0.2, minDist = 0.05)
map.splitParallelEdges()
map.initializeMap()
assert map.checkConsistency(), "map inconsistent"
assert maputils.checkLabelConsistency(map), "map.labelImage() inconsistent"
# merge faces so that survivor has a hole:
hole = map.faceAt((16,17))
assert hole.contains((16,17))
assert contourPoly(hole.contour()).contains((16,17))
dart = hole.contour()
while True:
while dart.startNode().hasMinDegree(3):
face = maputils.removeEdge(dart.clone().prevSigma())
if dart.nextPhi() == hole.contour():
break
assert face.holeCount() > 0 # should have hole
for p in [(3, 24), (10, 15), (13, 21)]: # in region, but not within hole
assert face.contains(p)
for p in [(16, 17), (13, 17)]: # in hole
assert not face.contains(p)
assert hole.contains(p)
# which ATM leads to overlapping edges after border closing. That
# violates some assumptions and would lead to errors if we actually
# worked with that Map.
map = GeoMap(maxima2, [], Size2D(39, 39))
maputils.addFlowLinesToMap(flowlines2, map)
assert map.checkConsistency(), "graph inconsistent"
map.sortEdgesEventually(stepDist=0.2, minDist=0.05)
map.splitParallelEdges()
map.initializeMap()
assert map.checkConsistency(), "map inconsistent"
assert maputils.checkLabelConsistency(map), "map.labelImage() inconsistent"
# merge faces so that survivor has a hole:
hole = map.faceAt((16, 17))
assert hole.contains((16, 17))
assert contourPoly(hole.contour()).contains((16, 17))
dart = hole.contour()
while True:
while dart.startNode().hasMinDegree(3):
face = maputils.removeEdge(dart.clone().prevSigma())
if dart.nextPhi() == hole.contour():
break
assert face.holeCount() > 0 # should have hole
for p in [(3, 24), (10, 15), (13, 21)]: # in region, but not within hole
assert face.contains(p)
for p in [(16, 17), (13, 17)]: # in hole
assert not face.contains(p)
assert hole.contains(p)
def addMapOverlay(fe, overlay, skipBorder = False, **attr):
qtColor2figColor = figexport.qtColor2figColor
# FIXME: str(type(overlay)).contains(...) instead?
if isinstance(overlay, ROISelector):
color = qtColor2figColor(overlay.color, fe.f)
return fe.addROIRect(overlay.roi, penColor = color, **attr)
elif isinstance(overlay, (MapNodes, MapEdges, MapFaces)):
oldScale, oldOffset, oldROI = fe.scale, fe.offset, fe.roi
if isinstance(overlay, MapFaces):
zoom = overlay.edgeOverlay._zoom
else:
zoom = overlay._zoom
extraZoom = float(zoom) / overlay.viewer.zoomFactor()
fe.scale *= extraZoom
fe.roi = BoundingBox(fe.roi.begin() / extraZoom,
fe.roi.end() / extraZoom)
map = overlay._map()
if isinstance(overlay, MapNodes):
radius = overlay.origRadius
if not overlay.relativeRadius:
radius /= float(overlay._zoom)
color = qtColor2figColor(overlay.color, fe.f)
result = fe.addMapNodes(map, radius,
fillColor = color, lineWidth = 0, **attr)
elif isinstance(overlay, MapEdges):
attr = dict(attr)
if overlay.width:
attr["lineWidth"] = overlay.width
if overlay.colors:
result = fig.Compound(fe.f)
for edge in map.edgeIter():
edgeColor = overlay.colors[edge.label()]
if edgeColor:
fe.addClippedPoly(edge,
penColor = qtColor2figColor(edgeColor, fe.f),
container = result, **attr)
elif overlay.color:
result = fe.addMapEdges(
map, skipBorder = skipBorder,
penColor = qtColor2figColor(overlay.color, fe.f),
**attr)
else:
result = fig.Compound(fe.f)
if overlay.protectedColor:
attr["penColor"] = \
qtColor2figColor(overlay.protectedColor, fe.f)
attr["lineWidth"] = overlay.protectedWidth or overlay.width
it = skipBorder and maputils.nonBorderEdges(map) \
or map.edgeIter()
for edge in it:
if edge.flag(flag_constants.ALL_PROTECTION):
fe.addClippedPoly(edge, container = result, **attr)
else: # isinstance(overlay, MapFaces)
attr = dict(attr)
if overlay.color:
if overlay.width:
attr["lineWidth"] = overlay.width
attr["penColor"] = qtColor2figColor(overlay.color, fe.f)
if overlay.fillColor:
attr["fillColor"] = qtColor2figColor(overlay.fillColor, fe.f)
attr["fillStyle"] = fig.FillStyle.Solid
result = fig.Compound(fe.f)
for face in map.faceIter():
if face.flag(overlay.flags):
if face.holeCount:
assert not overlay.fillColor or not overlay.color, "FIXME: cannot currently export filled+stroked polygons with holes"
if not overlay.color:
wholePoly = list(contourPoly(face.contour()))
back = wholePoly[0]
assert wholePoly[-1] == back
for dart in face.holeContours():
wholePoly.extend(contourPoly(dart))
wholePoly.append(back)
fe.addClippedPoly(wholePoly,
container = result, **attr)
else:
for dart in face.contours():
fe.addClippedPoly(contourPoly(dart),
container = result, **attr)
fe.scale, fe.offset, fe.roi = oldScale, oldOffset, oldROI
return result
else:
return figexport.addStandardOverlay(fe, overlay, **attr)
def addMapFaces(self, geomap, faceMeans = None, similarity = None,
returnFaces = False, container = True, **attr):
"""fe.addMapFaces(geomap, faceMeans, ...)
Adds and returns fig.Polygons for all map faces (or -parts,
see addClippedPoly). Clipping closed polygons should work
nowadays, too."""
import maputils
def getGray(face):
faceColor = faceMeans[face.label()]
return self.f.gray(int(faceColor))
def getRGB(face):
faceColor = faceMeans[face.label()]
return self.f.getColor(map(int, tuple(faceColor)), similarity)
if not faceMeans:
if not hasattr(geomap, "faceMeans"):
raise ValueError("addMapFaces: need faceMeans for proper coloring")
faceMeans = geomap.faceMeans
if hasattr(faceMeans, "bands"):
getFaceColor = getGray
if faceMeans.bands() == 3:
getFaceColor = getRGB
else:
getFaceColor = lambda face: faceMeans[face.label()]
if container == True:
container = self.f
attr = dict(attr)
attr["lineWidth"] = attr.get("lineWidth", 0)
attr["fillStyle"] = attr.get("fillStyle", fig.FillStyle.Solid)
compound = fig.Compound(container)
if returnFaces:
result = []
else:
result = compound
todo = [geomap.face(0)]
# +1 because the first iteration will not add any objects:
currentDepth = attr.get("depth", 100) + 1
while todo:
thisLayer = todo
todo = []
for face in thisLayer:
if face.area() > 0:
color = getFaceColor(face)
if color is not None:
thisattr = dict(attr)
thisattr["fillColor"] = getFaceColor(face)
thisattr["depth"] = currentDepth
parts = self.addClippedPoly(
contourPoly(face.contour()),
container = compound, **thisattr)
if returnFaces:
result.extend([(face, part) for part in parts])
for anchor in face.holeContours():
todo.extend(maputils.holeComponent(anchor))
currentDepth -= 1
return result
