def mapPoint(id=11):
#bbox
minx, maxx, miny, maxy = boundingBox(nahalal_basin)
current_pnt = gv.Points(smp_pnt.query("id=={}".format(id)))
pnts = gv.Points(smp_pnt, vdims=["id", "description"])
basin = gv.Contours(nahalal_basin)
# hovertool
hover = HoverTool(tooltips=[("Point #",
"@id"), ("Description", '@description')])
points_map = ((
gts.EsriImagery.opts(alpha=0.4) * gts.OSM.opts(alpha=0.4) *
basin.opts(color='chocolate', line_width=2, alpha=.5) *
gv.Path(kishon).opts(line_width=3.5,
alpha=0.4,
line_color="darkblue",
line_dash="dashed") *
gv.Path(nahalal).opts(line_width=2.5, alpha=0.4, line_color="blue") *
gv.Path(nahalal_sub).opts(
line_width=2, line_dash="dashdot", alpha=0.4, line_color="blue") *
pnts.opts(size=13, alpha=0.6, tools=[hover]) *
current_pnt.opts(size=20, color="purple")
# * gv.Contours(interest_zone).opts(alpha=0)
).opts(width=500,
height=375,
fontsize={
'labels': labels_fsize,
'xticks': tick_fsize,
'yticks': tick_fsize
}).redim.range(Longitude=(minx, maxx), Latitude=(miny, maxy)))
return points_map
def inner(departure_lat, departure_lon, arrival_lat, arrival_lon):
opts = {
'xaxis': None,
'yaxis': None,
'responsive': True,
'active_tools': ['wheel_zoom']
}
departure_station_id = closest_station(self.stations,
departure_lat,
departure_lon)
arrival_station_id = closest_station(self.stations, arrival_lat,
arrival_lon)
unselected_stations = self.stations.loc[
~self.stations['station_id'].
isin([departure_station_id, arrival_station_id])]
departure_station = self.stations.loc[[departure_station_id]]
arrival_station = self.stations.loc[[arrival_station_id]]
unselected = gv.Points(
unselected_stations, ['lat', 'lon'],
['station_name']).opts(tools=[self.unselected_hover])
departure = gv.Points(departure_station, ['lat', 'lon'],
['station_name']).opts(
tools=[self.departure_hover],
size=5,
color='black')
arrival = gv.Points(arrival_station, ['lat', 'lon'],
['station_name']).opts(
tools=[self.arrival_hover],
size=5,
color='red')
return (self.tiles * unselected * departure * arrival).opts(**opts)
def plotthis(datetime, regions='Whole_East_Coast'):
dat = datetime
# datetostr=result.strftime("%Y%b%d%H")
dt = parse(str(dat))
yr = dt.year
mn = dt.month
d = dt.day
hr = dt.hour
mi = dt.minute
if hr < 10:
hr = '0' + str(hr)
else:
d = str(d)
hr = str(hr)
if int(d) < 10:
d = '0' + str(d)
else:
d = str(d)
varname = 'Steepn_' + str(yr) + '0' + str(mn) + str(
d) + '_' + hr + '0000'
x = Xp.flatten()
y = Yp.flatten()
z = datamat[varname]
if regions is 'Odisha':
z = np.where(((Xp >= 85) & (Xp <= 88) & (Yp >= 19) & (Yp <= 22)),
z, np.nan).flatten()
elif regions is 'Andra_Pradesh':
z = np.where(((Xp >= 79) & (Xp <= 85) & (Yp >= 13) & (Yp <= 19)),
z, np.nan).flatten()
elif regions is 'Tamil_Nadu':
z = np.where(((Xp >= 77) & (Xp <= 83) & (Yp >= 7) & (Yp <= 14)), z,
np.nan).flatten()
elif regions is 'Whole_East_Coast':
z = z.flatten()
else:
# data = get_data4region(data,**odisha)
z = z.flatten()
# z = z.flatten()
Longitude = x
Latitude = y
HS = z
pts = np.stack((Longitude, Latitude, HS)).T
verts = pd.DataFrame(np.stack((Longitude, Latitude, HS)).T,
columns=['Longitude', 'Latitude', 'HS'])
# openStreet Background.
tri_sub = tri_new.apply(lambda x: x - 1)
ggpoints = gv.Points(verts, vdims=['HS'])
ggsubraster = rasterize(gv.TriMesh((tri_sub, gv.Points(verts))))
tri = gv.TriMesh((tri_sub, gv.Points(verts)))
return tri
def geoview_flat_plot(region_da, time_sel=0, level_sel=False, wide_chile=True):
if type(level_sel) is int:
da = region_da.isel(level=level_sel)
else:
da = region_da
gv_ds = gv.Dataset(da.isel(time=time_sel))
plot = gv_ds.to(gv.Image, ['lon', 'lat'], 't', 'time').opts(cmap='viridis',
colorbar=True)
extras = []
if wide_chile:
easter_island_text = gv.Text(-104.360481, -24.104671, 'Easter Island').opts(color='white')
easter_island_point = gv.Points([(-109.360481, -27.104671)]).opts(color='red')
easter = easter_island_point * easter_island_text
falkland_islands_text = gv.Text(-49.563412, -56.820557, 'Falklands').opts(color='white')
falkland_islands_point = gv.Points([(-51.563412, -59.820557)]).opts(color='red')
falkland = falkland_islands_point * falkland_islands_text
extras.append(easter * falkland)
plot = contours(plot, filled=True, overlaid=True)
with warnings.catch_warnings():
warnings.simplefilter("ignore")
final_plot = plot * gf.coastline
for extra in extras:
final_plot *= extra
gv.output(final_plot)
def bbox_selector(metadata_csv=None,
metadata_csv_lon_column='Longitude',
metadata_csv_lat_column='Latitude',
bounds=(-124.5, 40, -108, 50),
basemap_url=None):
'''
Draw bounding box (hold shift) on basemap and return vertices.
Select bounding box to delete.
'''
OpenTopoMap = 'https://tile.opentopomap.org/{Z}/{X}/{Y}.png'
OpenStreetMap = 'http://tile.openstreetmap.org/{Z}/{X}/{Y}.png'
GoogleHybrid = 'https://mt1.google.com/vt/lyrs=y&x={X}&y={Y}&z={Z}'
GoogleSatellite = 'https://mt1.google.com/vt/lyrs=s&x={X}&y={Y}&z={Z}'
GoogleRoad = 'https://mt1.google.com/vt/lyrs=m&x={X}&y={Y}&z={Z}'
GoogleTerrain = 'http://mt0.google.com/vt/lyrs=p&hl=en&x={X}&y={Y}&z={Z}'
GoogleTerrainOnly = 'http://mt0.google.com/vt/lyrs=t&hl=en&x={X}&y={Y}&z={Z}'
ESRIImagery = 'https://server.arcgisonline.com/ArcGIS/rest/services/World_Imagery/MapServer/tile/{Z}/{Y}/{X}.jpg'
Wikimedia = 'https://maps.wikimedia.org/osm-intl/{Z}/{X}/{Y}@2x.png'
print('Toggle Box Edit Tool and hold shift to draw bounding box.')
if not basemap_url:
url = GoogleSatellite
basemap = gv.WMTS(url, extents=bounds).opts(aspect=1, frame_height=500)
if metadata_csv:
df = pd.read_csv(metadata_csv)
df = df.loc[(df[metadata_csv_lat_column] < bounds[3])
& (df[metadata_csv_lat_column] > bounds[1]) &
(df[metadata_csv_lon_column] > bounds[0]) &
(df[metadata_csv_lon_column] < bounds[2])].reset_index(
drop=True)
coords = list(
zip(df[metadata_csv_lon_column].values,
df[metadata_csv_lat_column].values))
points = gv.Points(coords).opts(size=10, frame_height=500)
else:
points = gv.Points({}).opts(size=10, frame_height=500)
box_poly = gv.Polygons([{}]).opts(
opts.Polygons(fill_alpha=0,
line_color='yellow',
line_width=3,
selection_fill_color='red'))
box_stream = BoxEdit(source=box_poly)
return basemap * points * box_poly, box_stream
def grid(self, tiles=False, **kwargs):
x = kwargs.get("x", self._obj.SCHISM_hgrid_node_x[:].values)
y = kwargs.get("y", self._obj.SCHISM_hgrid_node_y[:].values)
tes = kwargs.get("tri3", self._obj.SCHISM_hgrid_face_nodes.values)
width = kwargs.get("width", 800)
height = kwargs.get("height", 600)
opts.defaults(opts.WMTS(width=width, height=height))
tile = gv.WMTS("https://b.tile.openstreetmap.org/{Z}/{X}/{Y}.png")
nodes = pd.DataFrame({"longitude": x, "latitude": y})
points = gv.operation.project_points(gv.Points(nodes))
if tes.shape[1] == 3:
elems = pd.DataFrame(tes, columns=["a", "b", "c"])
trimesh = gv.TriMesh((elems, points)).edgepaths
if tiles:
return tile * datashade(
trimesh, precompute=True, cmap=["black"])
else:
return datashade(trimesh, precompute=True,
cmap=["green"]).opts(width=width,
height=height)
else: # there are quads
elems = pd.DataFrame(tes, columns=["a", "b", "c", "d"])
quads = elems.loc[~elems.d.isna()].copy()
quads = quads.reset_index(drop=True)
ap = nodes.loc[quads.a, ["longitude", "latitude"]]
bp = nodes.loc[quads.b, ["longitude", "latitude"]]
cp = nodes.loc[quads.c, ["longitude", "latitude"]]
dp = nodes.loc[quads.d, ["longitude", "latitude"]]
quads["ap"] = ap.values.tolist()
quads["bp"] = bp.values.tolist()
quads["cp"] = cp.values.tolist()
quads["dp"] = dp.values.tolist()
q = gv.Polygons([
quads.loc[i, ["ap", "bp", "cp", "dp"]].tolist()
for i in range(quads.shape[0])
]).options(fill_alpha=0, line_color="black")
triangles = elems.loc[elems.d.isna()]
trimesh = gv.TriMesh((triangles, points)).edgepaths
g1 = datashade(trimesh, precompute=True, cmap=["black"])
if tiles:
return tile * g1 * q
else:
return g1 * q
def geodframe_to_geoviews(obj, geo_type, crs):
"""Converts the geometry in a GeoPandas GeoDataFrame into a list formatted for Geoviews
only accepts one data type per object
Parameters
----------
obj - geopandas geodataframe with geometry column of shapely objects
geo_type - string - type of geometry to extract from gdf 'point' or 'polygon'.
Only one geometry type can be extracted from a gdf
crs - cartopy.crs projection
"""
if geo_type is 'point':
data = [item.coords for item in obj.geometry]
element = gv.Points(data, crs=crs)
for col in obj.columns:
if col is not 'geometry':
element = element.add_dimension(col, 0, obj[col], True)
elif geo_type is 'polygon':
data = [item.coords for item in obj.geometry.boundary]
element = gv.Polygons(data, crs=crs)
for col in obj.columns:
if col is not 'geometry':
element = element.add_dimension(col, 0, obj[col], True)
else:
raise IOError('Shapely geometry type {} not supported'.format(
obj.geometryType()))
return element
def contourf(self, var='depth', it=None, **kwargs):
x = kwargs.get('x', self._obj.SCHISM_hgrid_node_x[:].values)
y = kwargs.get('y', self._obj.SCHISM_hgrid_node_y[:].values)
try:
t = kwargs.get('t', self._obj.time.values)
except:
pass
tri3 = kwargs.get(
'tri3',
self._obj.SCHISM_hgrid_face_nodes.values[:, :3].astype(int))
z = kwargs.get('z', self._obj[var].values[it, :].flatten())
nodes = pd.DataFrame({
'longitude': x,
'latitude': y,
'{}'.format(var): z
})
elems = pd.DataFrame(tri3, columns=['a', 'b', 'c'])
opts.defaults(opts.WMTS(width=800, height=400))
tiles = gv.WMTS(
'https://maps.wikimedia.org/osm-intl/{Z}/{X}/{Y}@2x.png')
points = gv.operation.project_points(
gv.Points(nodes, vdims=['{}'.format(var)]))
trimesh = gv.TriMesh((elems, points))
return tiles * rasterize(trimesh, aggregator='mean').opts(
colorbar=True, cmap='Viridis', padding=.1, tools=['hover'])
def industry_size_map(data_list, data_values_list, industry_col):
for ind, data_df in enumerate(data_list):
renderer = gv.renderer('bokeh')
gv_points = gv.Points(data_df, ['longitude', 'latitude'],
[industry_col, 'YeshuvAtarSvivatiMenifa'])
data_df.rename(columns={industry_col: ""})
tooltips = [("Amount", "@" + industry_col),
("Location", '@YeshuvAtarSvivatiMenifa')]
hover = HoverTool(tooltips=tooltips)
# map_plot =gvts.CartoLight.options(width=500, height=800, xaxis=None, yaxis=None, show_grid=False) * gv_points
map_plot = (gvts.CartoLight * gv_points).opts(
opts.Points(width=400,
height=700,
alpha=0.3,
hover_line_color='black',
color=color_looper_bokeh(ind),
line_color='black',
xaxis=None,
yaxis=None,
tools=[hover],
size=dim(industry_col) * 10,
hover_fill_color=None,
hover_fill_alpha=0.5))
dir = save_geoviews(map_plot=map_plot,
file_name="map " + industry_col + "-" +
data_values_list[ind],
renderer=renderer,
output_folder="Output_files")
def getGeoElementFromData(self, data,vdims=None):
arrayGeomType = data.geom_type.unique()
for geomType in arrayGeomType:
data = data[data['geometry'].apply(lambda x: x.geom_type == geomType)]
if geomType in POINT:
geomNdOverlay = gv.Points(data, vdims=vdims,crs=ccrs.GOOGLE_MERCATOR, group=POINT[0])
elif geomType in LINESTRING:
data['geometry'] = data.simplify(SOFT_SIMPLIFY, True)
geomNdOverlay = gv.Path(data, vdims=vdims,crs=ccrs.GOOGLE_MERCATOR, group=LINESTRING[0])
elif geomType in MULTILINESTRING:
data['geometry'] = data.simplify(SOFT_SIMPLIFY, True)
geomNdOverlay = gv.Path(data, vdims=vdims, crs=ccrs.GOOGLE_MERCATOR,
group=MULTILINESTRING[0])
elif geomType in POLYGONE:
data['geometry'] = data.simplify(STRONG_SIMPLIFY, True)
geomNdOverlay = gv.Polygons(data, vdims=vdims, crs=ccrs.GOOGLE_MERCATOR, group=POLYGONE[0])
elif geomType in MULTIPOLYGONE:
data['geometry'] = data.simplify(STRONG_SIMPLIFY, True)
geomNdOverlay = gv.Polygons(data, vdims=vdims, crs=ccrs.GOOGLE_MERCATOR,
group=MULTIPOLYGONE[0])
elif geomType in GEOMETRYCOLLECTION:
data = data.explode()
geomNdOverlay = GeomUtil.getGeoElementFromData(self,data=data)
else:
return None
return geomNdOverlay.opts(tools=['hover', 'tap'])
def pick_heading_from_map(image_file_name,
camera_center_lon,
camera_center_lat,
dx=0.015,
dy=0.015):
# Google Satellite tiled basemap imagery url
url = 'https://mt1.google.com/vt/lyrs=s&x={X}&y={Y}&z={Z}'
# TODO
# # allow large images to be plotted or force resampling to thumbnail
# # load the image with xarray and plot with hvplot to handle larger images
img, subplot_width, subplot_height = hv_plot_raster(image_file_name)
# create the extent of the bounding box
extents = (camera_center_lon - dx, camera_center_lat - dy,
camera_center_lon + dx, camera_center_lat + dy)
# run the tile server
tiles = gv.WMTS(url, extents=extents)
points = gv.Points(
[(camera_center_lon, camera_center_lat, 'camera_center')],
vdims='location')
point_stream = hv.streams.PointDraw(source=points)
base_map = (tiles * points).opts(
opts.Points(width=subplot_width,
height=subplot_height,
size=10,
color='black',
tools=["hover"]))
row = pn.Row(img, base_map)
server = row.show(threaded=True)
condition = True
while condition == True:
try:
if len(point_stream.data['x']) == 2:
server.stop()
condition = False
except:
pass
projected = gv.operation.project_points(point_stream.element,
projection=ccrs.PlateCarree())
df = projected.dframe()
df['location'] = ['camera_center', 'flight_direction']
heading_lon = df.x[1]
heading_lat = df.y[1]
heading = hsfm.geospatial.calculate_heading(camera_center_lon,
camera_center_lat, heading_lon,
heading_lat)
return heading
def plotthis(z, regions='w'):
if regions is 'O':
z = np.where(((x >= 2) & (x <= 3) & (y >= 51) & (y <= 52)), z,
np.nan).flatten()
elif regions is 'A':
z = np.where(((x >= 3) & (x <= 4) & (y >= 54) & (y <= 57)), z,
np.nan).flatten()
elif regions is 'T':
z = np.where(((x >= 0) & (x <= 3) & (y >= 51) & (y <= 57)), z,
np.nan).flatten()
# else:
# # data = get_data4region(data,**odisha)
# z=z.flatten()
print("lx:", len(x), "ly:", len(y), "lz:", len(z))
print("z", z)
verts = pd.DataFrame(np.stack((x, y, z)).T, columns=['X', 'Y', 'Z'])
# #openStreet Background.
# tri_sub = cf.apply(lambda x: x - 1)
# tri_sub=tri_sub[:10]
tri = gv.TriMesh((triangles, gv.Points(verts)))
return tri
def request_basemap_tiles(
lon,
lat,
dx,
dy,
url='https://mt1.google.com/vt/lyrs=s&x={X}&y={Y}&z={Z}',
utm=False):
if utm == False:
extents = (lon - dx, lat - dy, lon + dx, lat + dy)
tiles = gv.WMTS(url, extents=extents)
location = gv.Points([], vdims="vertices")
point_stream = PointDraw(source=location)
tiles = gv.WMTS(url, extents=extents)
return tiles
else:
u = utm.from_latlon(lat, lon)
utm_lon = u[0]
utm_lat = u[1]
utm_zone = u[2]
utm_zone_code = u[3]
extents = utm_lon - dx, utm_lat - dy, utm_lon + dx, utm_lat + dy
tiles = gv.WMTS(url, extents=extents, crs=ccrs.UTM(utm_zone))
return tiles, utm_zone
def get_trimesh(
dataset: xr.Dataset,
longitude_var: str,
latitude_var: str,
elevation_var: str,
simplices_var: str,
time_var: str,
timestamp: str | pd.Timestamp,
) -> gv.TriMesh:
simplices = dataset[simplices_var].values
columns = [longitude_var, latitude_var, elevation_var]
if timestamp == "MAXIMUM":
points_df = dataset.max(time_var)[columns].to_dataframe()
elif timestamp == "MINIMUM":
points_df = dataset.min(time_var)[columns].to_dataframe()
else:
points_df = dataset.sel(
{time_var:
timestamp})[columns].to_dataframe().drop(columns=time_var)
points_df = points_df.reset_index(drop=True)
points_gv = gv.Points(points_df,
kdims=[longitude_var, latitude_var],
vdims=elevation_var)
trimesh = gv.TriMesh((simplices, points_gv))
return trimesh
def reproject_points(self):
"""Method to set the mesh points as gv points (projected if necessary)"""
# reproject the points
self.mesh_points = gv.operation.project_points(
gv.Points(self.verts[['x', 'y', 'z']],
vdims=['z'],
crs=self.projection.get_crs()),
projection=ccrs.GOOGLE_MERCATOR)
def pick_points_from_basemap_tiles(tiles, utm_zone=None):
if utm_zone == None:
location = gv.Points([], vdims="vertices")
else:
location = gv.Points([], vdims="vertices", crs=ccrs.UTM(utm_zone))
point_stream = PointDraw(source=location)
base_map = (tiles * location).opts(
opts.Points(width=500,
height=500,
size=12,
color='black',
tools=["hover"]))
app = pn.panel(base_map)
return app, point_stream
def contourf(self, var="depth", it=None, tiles=False, **kwargs):
x = kwargs.get("x", self._obj.SCHISM_hgrid_node_x[:].values)
y = kwargs.get("y", self._obj.SCHISM_hgrid_node_y[:].values)
try:
t = kwargs.get("t", self._obj.time.values)
except:
pass
tes = kwargs.get("tri3",
self._obj.SCHISM_hgrid_face_nodes.values[:, :4])
# sort out quads
try:
mask = np.isnan(tes)[:, 3]
tr3 = tes[mask][:, :3]
tr3_ = quads_to_tris(tes[~mask])
if tr3_:
tri3 = np.append(tr3, tr3_, axis=0).astype(int)
else:
tri3 = tr3.astype(int)
except:
tri3 = tes.astype(int)
if tri3.min() > 0:
tri3 = tri3 - 1
z = kwargs.get("z", self._obj[var].values[it, :].flatten())
nodes = pd.DataFrame({
"longitude": x,
"latitude": y,
"{}".format(var): z
})
elems = pd.DataFrame(tri3, columns=["a", "b", "c"])
width = kwargs.get("width", 800)
height = kwargs.get("height", 600)
opts.defaults(opts.WMTS(width=width, height=height))
tile = gv.WMTS("https://b.tile.openstreetmap.org/{Z}/{X}/{Y}.png")
points = gv.operation.project_points(
gv.Points(nodes, vdims=["{}".format(var)]))
trimesh = gv.TriMesh((elems, points))
if tiles:
return tile * rasterize(trimesh, aggregator="mean").opts(
colorbar=True, cmap="Viridis", padding=0.1, tools=["hover"])
else:
return rasterize(trimesh, aggregator="mean").opts(
colorbar=True,
cmap="Viridis",
padding=0.1,
tools=["hover"],
width=width,
height=height,
)
def _load(self):
self.scatter = pd.read_csv(self.filepath,
sep=',',
names=['x', 'y', 'z'])
self.scatter_pts = gv.Points(data=self.scatter,
crs=self.scatter_projection.get_crs(),
vdims=['z'],
kdims=['x', 'y'])
self.scatter_toggle = True
def update_map_val(attr, old, new):
global selection, vizual, gvplot, hvplot, heatmap, feats, points, world_map, temp_feats
max_cur_feature = loc_feats[choice.value].max()
min_cur_feature = loc_feats[choice.value].min()
new_loc_feats = temp_feats.loc[(temp_feats[choice.value] <= new[1])
& (temp_feats[choice.value] >= new[0])]
feats = gv.Dataset(new_loc_feats,
kdims=['Longitude', 'Latitude', choice.value])
points = feats.to(gv.Points, ['Longitude', 'Latitude'], [choice.value])
if len(new_loc_feats) <= 20000:
world_map = gv.Points(points).options(
'Points',
size=5,
cmap='viridis',
colorbar=True,
tools=TOOLS,
color_index=2,
width=900,
height=800,
colorbar_opts={'scale_alpha': 0.5},
fill_alpha=0.5,
line_alpha=0.5)
else:
world_map = decimate(gv.Points(points), max_samples=20000).options(
'Points',
size=5,
cmap='viridis',
colorbar=True,
tools=TOOLS,
color_index=2,
width=900,
height=800,
colorbar_opts={'scale_alpha': 0.5},
fill_alpha=0.5,
line_alpha=0.5)
selection = hv.streams.Selection1D(source=world_map)
heatmap = hv.DynamicMap(selected_points, streams=[selection])
box = hv.streams.BoundsXY(source=world_map)
zoom = hv.DynamicMap(test_bounds, streams=[box])
hvplot = renderer.get_plot(heatmap, curdoc())
gvplot = renderer.get_plot(world_map, curdoc())
bvplot = renderer.get_plot(zoom, curdoc())
vizual.children[1].children = [gvplot.state, hvplot.state, bvplot.state]
def grid(self, tiles=False, **kwargs):
x = kwargs.get('x',self._obj.SCHISM_hgrid_node_x[:].values)
y = kwargs.get('y',self._obj.SCHISM_hgrid_node_y[:].values)
tes = kwargs.get('tri3',self._obj.SCHISM_hgrid_face_nodes.values)
width = kwargs.get('width', 800)
height = kwargs.get('height', 600)
opts.defaults(opts.WMTS(width=width, height=height))
tile = gv.WMTS('https://b.tile.openstreetmap.org/{Z}/{X}/{Y}.png')
nodes = pd.DataFrame({'longitude':x,'latitude':y})
points = gv.operation.project_points(gv.Points(nodes))
if tes.shape[1] == 3 :
elems = pd.DataFrame(tes, columns=['a', 'b', 'c'])
trimesh=gv.TriMesh((elems, points)).edgepaths
if tiles:
return tile * datashade(trimesh, precompute=True, cmap=['black'])
else:
return datashade(trimesh, precompute=True, cmap=['green']).opts(width=width,height=height)
else: # there are quads
elems = pd.DataFrame(tes, columns=['a', 'b', 'c', 'd'])
quads = elems.loc[~elems.d.isna()].copy()
quads = quads.reset_index(drop=True)
ap = nodes.loc[quads.a,['longitude','latitude']]
bp = nodes.loc[quads.b,['longitude','latitude']]
cp = nodes.loc[quads.c,['longitude','latitude']]
dp = nodes.loc[quads.d,['longitude','latitude']]
quads['ap'] = ap.values.tolist()
quads['bp'] = bp.values.tolist()
quads['cp'] = cp.values.tolist()
quads['dp'] = dp.values.tolist()
q = gv.Polygons([quads.loc[i,['ap','bp','cp','dp']].tolist() for i in range(quads.shape[0])]).options(fill_alpha=0, line_color='black')
triangles = elems.loc[elems.d.isna()]
trimesh=gv.TriMesh((triangles, points)).edgepaths
g1 = datashade(trimesh, precompute=True, cmap=['black'])
if tiles :
return tile * g1 * q
else:
return g1 * q
def frames(self,var='depth', tiles=False, **kwargs):
x = kwargs.get('x',self._obj.SCHISM_hgrid_node_x[:].values)
y = kwargs.get('y',self._obj.SCHISM_hgrid_node_y[:].values)
try:
t = kwargs.get('t',self._obj.time.values)
except:
pass
tes = kwargs.get('tri3',self._obj.SCHISM_hgrid_face_nodes.values[:,:4])
# sort out quads
try:
mask = np.isnan(tes)[:,3]
tr3 = tes[mask][:,:3]
tr3_ = quads_to_tris(tes[~mask])
if tr3_ :
tri3 = np.append(tr3,tr3_,axis=0).astype(int)
else:
tri3 = tr3.astype(int)
except:
tri3 = tes.astype(int)
times=kwargs.get('times',self._obj.time.values)
z = kwargs.get('z',self._obj[var].values[0,:].flatten())
zmin = self._obj[var].values.min()
zmax = self._obj[var].values.max()
nodes = pd.DataFrame({'longitude':x,'latitude':y, '{}'.format(var):z})
elems = pd.DataFrame(tri3, columns=['a', 'b', 'c'])
width = kwargs.get('width', 800)
height = kwargs.get('height', 600)
opts.defaults(opts.WMTS(width=width, height=height))
tile = gv.WMTS('https://b.tile.openstreetmap.org/{Z}/{X}/{Y}.png')
points = gv.operation.project_points(gv.Points(nodes, vdims=['{}'.format(var)]))
trimesh = gv.TriMesh((elems, points))
def time_mesh(time):
points.data[var] = self._obj[var].sel(time=time).values
return gv.TriMesh((elems, points))#, crs=ccrs.GOOGLE_MERCATOR)
meshes = hv.DynamicMap(time_mesh, kdims=['Time']).redim.values(Time=times)
imesh = rasterize(meshes, aggregator='mean').opts(cmap='viridis', colorbar=True, padding=.1, tools=['hover'], clim=(zmin, zmax))
if tiles:
return hv.output(tile*imesh, holomap='scrubber', fps=1)
else:
return hv.output(imesh.opts(width=width,height=height), holomap='scrubber', fps=1)
def createOverlay(self,**kwargs):
traceP = kwargs.get("traceParam")
data = traceP.data
label = kwargs.get("label")
self.param.variable_taille_point.objects = traceP.listeEntier
self.param.variable_couleur.objects = data.columns
if not self.variable_taille_point:
self.silently = True
self.variable_taille_point = traceP.listeEntier[0]
if not self.variable_couleur:
self.silently = True
self.variable_couleur = traceP.listeEntier[0]
vdims = traceP.listeEntier
kdims = list(data.columns)[5:-1]
size = self.variable_taille_point
arrayGeomType = data.geom_type.unique()
for geomType in arrayGeomType:
data = data[data['geometry'].apply(lambda x: x.geom_type == geomType)]
if geomType in POINT:
geomNdOverlay = gv.Points(data, vdims=vdims, crs=crs.GOOGLE_MERCATOR, label=label, group=POINT[0], id=traceP.trace.id).options(size=dim(size).norm()*45)
## Convertir les autres géometry en barycentre
elif geomType in POLYGONE:
data['geometry'] = data.simplify(STRONG_SIMPLIFY,True)
geomNdOverlay = gv.Polygons(data,vdims=vdims, crs=crs.GOOGLE_MERCATOR,label=label, group=POLYGONE[0])
elif geomType in LINESTRING:
data['geometry'] = data.simplify(SOFT_SIMPLIFY, True)
geomNdOverlay = gv.Path(data, crs=crs.GOOGLE_MERCATOR,label=label, group=LINESTRING[0])
elif geomType in MULTILINESTRING:
data['geometry'] = data.simplify(SOFT_SIMPLIFY, True)
geomNdOverlay = gv.Path(data, crs=crs.GOOGLE_MERCATOR, label=label, group=MULTILINESTRING[0])
elif geomType in MULTIPOLYGONE:
data['geometry'] = data.simplify(STRONG_SIMPLIFY,True)
geomNdOverlay = gv.Polygons(data, vdims=vdims, crs=crs.GOOGLE_MERCATOR,label=label, group=MULTIPOLYGONE[0])
else:
geomNdOverlay = None
overlay = hv.Overlay([geomNdOverlay.opts(tools=['hover', 'tap'],color=self.variable_couleur, cmap='Category20')])
return overlay
def callback(self, data):
if (self.display == 'Probability of train delay'):
layout = gv.Points(data,
vdims=[
'color', 'displaysize', 'name',
'waittime_str', 'delay_prob', 'MTAdelay',
'inboundtrain', 'inbound_from'
]).opts(tools=[SubwayMap.hover_delays],
size='displaysize',
color='color')
#elif(self.display == 'Time since last train'):
else:
layout = gv.Points(data,
vdims=[
'waittimecolor', 'waittimedisplaysize',
'name', 'waittime_str', 'delay_prob',
'MTAdelay'
]).opts(tools=[SubwayMap.hover_waittime],
size='waittimedisplaysize',
color='waittimecolor')
return layout
def get_plot_point(x, y):
if None not in [x, y]:
add_remove_pts(x, y, data, dataset, fmt)
if ((x is None) or (y is None)) and len(data.xys) == 0:
xys = [(data.x0, data.y0)]
hpoint = gv.Points(xys).opts(show_legend=False, visible=False)
htext = gv.HoloMap({
i: gv.Text(*xy, '{}'.format(i + 1)).opts(show_legend=False,
visible=False)
for i, xy in enumerate(xys)
}).overlay()
else:
xys = data.xys
hpoint = gv.Points(xys).opts(color='r', size=3, show_legend=False)
htext = gv.HoloMap({
i: gv.Text(*xy, '{}'.format(i + 1)).opts(show_legend=False,
color='k',
fontsize=3)
for i, xy in enumerate(xys)
}).overlay()
return hpoint * htext
def update_map(attr, old, new):
global selection, vizual, gvplot, hvplot, heatmap, feats, points, world_map, range_slider, controls3, max_cur_feature, min_cur_feature, temp_feats
max_cur_feature = temp_feats[choice.value].max()
min_cur_feature = temp_feats[choice.value].min()
range_slider = RangeSlider(start=min_cur_feature,
end=max_cur_feature,
value=(min_cur_feature, max_cur_feature),
step=(max_cur_feature - min_cur_feature) / 20,
title="Feature_range")
range_slider.on_change('value', update_map_val)
controls3 = widgetbox([range_slider], width=250)
new_loc_feats = temp_feats.loc[
(temp_feats[choice.value] < range_slider.value[1])
& (temp_feats[choice.value] > range_slider.value[0])]
feats = gv.Dataset(new_loc_feats, kdims=['Longitude', 'Latitude', new])
points = feats.to(gv.Points, ['Longitude', 'Latitude'], [new])
if len(new_loc_feats) <= 20000:
world_map = gv.Overlay(tiles * points).options(
'Points',
size=5,
cmap='viridis',
colorbar=True,
tools=TOOLS,
color_index=2,
width=900,
height=800,
global_extent=True,
colorbar_opts={'scale_alpha': 0.5},
fill_alpha=0.5,
line_alpha=0.5)
else:
world_map = decimate(gv.Points(points), max_samples=20000).options(
'Points',
size=5,
cmap='viridis',
colorbar=True,
tools=TOOLS,
color_index=2,
width=900,
height=800,
global_extent=True,
colorbar_opts={'scale_alpha': 0.5},
fill_alpha=0.5,
line_alpha=0.5)
selection = hv.streams.Selection1D(source=world_map)
heatmap = hv.DynamicMap(selected_points, streams=[selection])
zoom = hv.DynamicMap(test_bounds, streams=[box])
hvplot = renderer.get_plot(heatmap, curdoc())
gvplot = renderer.get_plot(world_map, curdoc())
bvplot = renderer.get_plot(zoom, curdoc())
vizual.children[1].children = [gvplot.state, hvplot.state, bvplot.state]
def create_mesh(self):
# Add refine points
points = self.annot.point_stream.element
refine_points = []
for x, y, s in zip(*(points.dimension_values(i) for i in range(3))):
if s:
refine_points.append(
xmsmesh.meshing.RefinePoint(create_mesh_point=True,
point=(x, y, 0),
size=float(s)))
else:
print('refine point {}, {} skipped due to missing size value'.
format(x, y))
input_polygon = []
# add each polygon to the input data
for ply in self.annot.poly_stream.element.split(datatype='dataframe'):
# add an additional dimension as zeros (for required dimensionality)
poly_data = np.hstack((ply[['Longitude', 'Latitude']].values,
np.zeros((len(ply['Latitude']), 1))))
# instantiate the redistribution class
rdp = xmsmesh.meshing.PolyRedistributePts()
# set the node distance
rdp.set_constant_size_func(
self.node_spacing) # create_constant_size_function
# run the redistribution function
outdata = rdp.redistribute(poly_data)
# convert the polygon to an 'input polygon'
input_polygon.append(
xmsmesh.meshing.PolyInput(outside_polygon=outdata))
# add the input polygons as polygons to the mesher class
self.mesh_io = xmsmesh.meshing.MultiPolyMesherIo(
poly_inputs=input_polygon, refine_points=refine_points)
# Generate Mesh
succeded, errors = xmsmesh.meshing.mesh_utils.generate_mesh(
mesh_io=self.mesh_io)
# convert the xms data format into dataframes
pts, self.cells = xmsmesh_to_dataframe(self.mesh_io.points,
self.mesh_io.cells)
# convert the pts df into a hv Points class
self.vert_points = gv.Points(pts,
vdims=['z'],
crs=ccrs.GOOGLE_MERCATOR)
def plotPowerPlants(df):
# size marker according to gross power output
iMaxSize = 30
iMinSize = 10
df["size"] = (df["Bruttoleistung"] - df["Bruttoleistung"].min()) / \
(df["Bruttoleistung"].max() - df["Bruttoleistung"].min()) * \
(iMaxSize - iMinSize) + iMinSize
# convert datetime to string
df["date"] = df["Inbetriebnahmedatum"].dt.strftime("%Y-%m-%d")
# define tooltips
tt = [
("Name", "@Name"),
("Address", "@Standort, @Bundesland, @Land"),
("Commissioning date", "@date"),
("Type", "@Einheittyp"),
("Gross generation", "@Bruttoleistung MW"),
]
hover_tool = bokeh.models.HoverTool(tooltips=tt)
# choose background tiles
overlay = gv.tile_sources.Wikipedia
# markers will be colored according to Einheittyp
groups = df["Einheittyp"].unique()
colors = {
"Wasser": palette[0],
"Biomasse": palette[2],
"Windeinheit": palette[4],
}
# create geoviews point objects
for group in groups:
df_group = df.loc[
df["Einheittyp"] == group,
["Name", "Standort", "Bundesland", "Land", "date",
"Einheittyp", "Bruttoleistung", "Laengengrad", "Breitengrad", "size"]
]
points = gv.Points(df_group, ["Laengengrad", "Breitengrad"], label=group).options(
aspect=2, responsive=True, tools=[hover_tool], size="size", active_tools=['wheel_zoom'],
fill_alpha=0.6, fill_color=colors[group], line_color="white",
)
overlay = (overlay * points)
# hide group when clicking on legend
overlay.options(click_policy="hide", clone=False)
# return figure
return overlay
def create_map(indices_meses):
df_filtrado = filtrar_por_indice(df_total, meses, indices_meses)
df_agregado = df_filtrado.groupby("nacionalidad").size().reset_index()
df_agregado.columns = ["nacionalidad", "conteo"]
df_map = df_agregado.merge(countries_df,
how="inner",
left_on=["nacionalidad"],
right_on=["country_spanish"])
df_map["tamaño"] = scale_size(df_map["conteo"], 10, 60).astype("int")
hover_points = HoverTool(
tooltips=[("Nacionalidad",
"@{nacionalidad}"), ("Nº Clienes", "@{conteo}")])
points = gv.Points(df_map,
kdims=["Capital Longitude", "Capital Latitude"],
vdims=["nacionalidad", "conteo", "tamaño"])
points.opts(size="tamaño",
padding=0.1,
color="nacionalidad",
cmap=["#00497c"],
fill_alpha=0.8,
hover_fill_alpha=1.0,
line_color="white",
line_width=2,
show_legend=False,
tools=[hover_points])
#tiles = gv.tile_sources.WMTS("https://b.basemaps.cartocdn.com/light_nolabels/{Z}/{X}/{Y}@2x.png", name="Carto_light_Nolabels")
tiles = gv.tile_sources.WMTS(
"https://tiles.stadiamaps.com/tiles/alidade_smooth_dark/{Z}/{X}/{Y}@2x.png",
name="Alidade_Smooth_Dark")
map = tiles * points
map_bokeh = renderer.get_plot(map).state
map_bokeh.toolbar.autohide = True
map_bokeh.height = 400
map_bokeh.width = 780
map_bokeh.sizing_mode = "scale_both"
return map_bokeh
def make_temporal_vel_pair_point_obj(date):
ttt = date.astype('datetime64[D]')
kdims = ["Longitude", "Latitude"]
vdims = [("e_max", "Velocity changes (%)"), "Pairname"]
opts = dict(color='e_max',
cmap="jet_r",
size=5,
tools=["hover"],
marker='s')
opts.update(opts1)
temporal_vel_pair_point_obj = gv.Points(data_mid_point_pair[ttt],
kdims=kdims,
vdims=vdims,
crs=ccrs.PlateCarree())
temporal_vel_pair_point_obj = temporal_vel_pair_point_obj.opts(**opts)
print("make_temporal_vel_pair_point_obj {}".format(date))
return (temporal_vel_pair_point_obj)
def frames(self, var='depth', **kwargs):
x = kwargs.get('x', self._obj.SCHISM_hgrid_node_x[:].values)
y = kwargs.get('y', self._obj.SCHISM_hgrid_node_y[:].values)
try:
t = kwargs.get('t', self._obj.time.values)
except:
pass
tri3 = kwargs.get(
'tri3',
self._obj.SCHISM_hgrid_face_nodes.values[:, :3].astype(int))
times = kwargs.get('times', self._obj.time.values)
z = kwargs.get('z', self._obj[var].values[0, :].flatten())
nodes = pd.DataFrame({
'longitude': x,
'latitude': y,
'{}'.format(var): z
})
elems = pd.DataFrame(tri3, columns=['a', 'b', 'c'])
opts.defaults(opts.WMTS(width=800, height=400))
tiles = gv.WMTS(
'https://maps.wikimedia.org/osm-intl/{Z}/{X}/{Y}@2x.png')
points = gv.operation.project_points(
gv.Points(nodes, vdims=['{}'.format(var)]))
trimesh = gv.TriMesh((elems, points))
def time_mesh(time):
points.data[var] = self._obj[var].sel(time=time).values
return gv.TriMesh((elems, points)) #, crs=ccrs.GOOGLE_MERCATOR)
meshes = hv.DynamicMap(time_mesh,
kdims=['Time']).redim.values(Time=times)
imesh = rasterize(meshes, aggregator='mean').opts(cmap='viridis',
colorbar=True,
padding=.1,
tools=['hover'])
return hv.output(tiles * imesh, holomap='scrubber', fps=1)
