def getImageTags(request):
renderObj = WebServiceObject()
# read in crucial parameters
tagGroupKey = request.GET.get('tagGroupId', None)
imageKey = request.GET.get('imageId', None)
# read in optional parameters and initialize the API
offset = Util.getInt(request.GET, 'offset', 0)
limit = Util.getInt(request.GET, 'limit', 10)
unlimited = request.GET.get('unlimited', False)
fields = Util.getDelimitedList(request.GET, 'fields')
getAPI = GetAPI(limit, offset, request.user, fields, unlimited)
if tagGroupKey:
# the key for lookup and the image it is attached to
renderObj = getAPI.getTagsByTagGroup(tagGroupKey, isKey=True)
elif imageKey:
# the key for lookup and the image it is attached to
renderObj = getAPI.getTagsByImage(imageKey, isKey=True)
else:
# get all the tags
renderObj = getAPI.getTags()
return renderObj
def getImageTags(request):
renderObj = WebServiceObject()
# read in crucial parameters
tagGroupKey = request.GET.get('tagGroupId', None)
imageKey = request.GET.get('imageId', None)
# read in optional parameters and initialize the API
offset = Util.getInt(request.GET, 'offset', 0)
limit = Util.getInt(request.GET, 'limit', 10)
unlimited = request.GET.get('unlimited', False)
fields = Util.getDelimitedList(request.GET, 'fields')
getAPI = GetAPI(limit, offset, request.user, fields, unlimited)
if tagGroupKey:
# the key for lookup and the image it is attached to
renderObj = getAPI.getTagsByTagGroup(tagGroupKey, isKey=True)
elif imageKey:
# the key for lookup and the image it is attached to
renderObj = getAPI.getTagsByImage(imageKey, isKey=True)
else:
# get all the tags
renderObj = getAPI.getTags()
return renderObj
def getQtl(request):
imageKey = request.GET.get('pictureID', None)
# read in optional parameters and initialize the API
fields = Util.getDelimitedList(request.GET, 'fields')
getAPI = GetAPI(request.user, fields)
return getAPI.getQtl(imageKey)
def getOrganisms(request):
# get the list of organisms (base on comma delimited list)
organisms = Util.getDelimitedList(request.GET, 'organisms')
# optional parameters
fields = Util.getDelimitedList(request.GET, 'fields')
getAPI = GetAPI(request.user, fields)
return getAPI.getOrganisms(organisms)
def getOrganisms(request):
# get the list of organisms (base on comma delimited list)
organisms = Util.getDelimitedList(request.GET, 'organisms')
# optional parameters
fields = Util.getDelimitedList(request.GET, 'fields')
getAPI = GetAPI(request.user, fields)
return getAPI.getOrganisms(organisms)
def getTagGroup(request):
# read in crucial parameters
tagGroupKey = request.GET.get('id', None)
# read in optional parameters and initialize the API
fields = Util.getDelimitedList(request.GET, 'fields')
getAPI = GetAPI(request.user, fields)
if not tagGroupKey:
raise Errors.NO_TAG_GROUP_KEY
# the key for lookup and the image it is attached to
return getAPI.getTagGroup(tagGroupKey)
def getTagGroup(request):
# read in crucial parameters
tagGroupKey = request.GET.get("id", None)
# read in optional parameters and initialize the API
fields = Util.getDelimitedList(request.GET, "fields")
getAPI = GetAPI(request.user, fields)
if not tagGroupKey:
raise Errors.NO_TAG_GROUP_KEY
# the key for lookup and the image it is attached to
return getAPI.getTagGroup(tagGroupKey)
def getGeneLink(request):
# read in crucial parameters
geneLinkKey = request.GET.get('id', None)
# read in optional parameters and initialize the API
fields = Util.getDelimitedList(request.GET, 'fields')
getAPI = GetAPI(request.user, fields)
if not geneLinkKey:
raise Errors.NO_GENE_LINK_KEY
# the key for lookup and the image it is attached to
return getAPI.getGeneLink(geneLinkKey)
def getGeneLink(request):
# read in crucial parameters
geneLinkKey = request.GET.get('id', None)
# read in optional parameters and initialize the API
fields = Util.getDelimitedList(request.GET, 'fields')
getAPI = GetAPI(request.user, fields)
if not geneLinkKey:
raise Errors.NO_GENE_LINK_KEY
# the key for lookup and the image it is attached to
return getAPI.getGeneLink(geneLinkKey)
def getImageMetadata(request):
renderObj = WebServiceObject()
if request.GET.has_key('id'):
# the key for lookup and the image it is attached to
imageKey = request.GET['id']
fields = Util.getDelimitedList(request.GET, 'fields')
getAPI = GetAPI(request.user, fields)
try:
renderObj = getAPI.getImageMetadata(imageKey)
except Errors.WebServiceException as e:
renderObj.setError(e)
else:
renderObj.setError(Errors.NO_IMAGE_KEY)
return renderObj
def getImageMetadata(request):
renderObj = WebServiceObject()
if request.GET.has_key('id'):
# the key for lookup and the image it is attached to
imageKey = request.GET['id']
fields = Util.getDelimitedList(request.GET, 'fields')
getAPI = GetAPI(request.user, fields)
try:
renderObj = getAPI.getImageMetadata(imageKey)
except Errors.WebServiceException as e:
renderObj.setError(e)
else:
renderObj.setError(Errors.NO_IMAGE_KEY)
return renderObj
def getImageTagGroups(request):
# the key for lookup and the image it is attached to
imageKey = request.GET.get('imageId', None)
offset = Util.getInt(request.GET, 'offset', 0)
limit = Util.getInt(request.GET, 'limit', 10)
unlimited = request.GET.get('unlimited', False)
fields = Util.getDelimitedList(request.GET, 'fields')
getAPI = GetAPI(limit, offset, request.user, fields, unlimited)
if imageKey:
return getAPI.getTagGroupsByImage(imageKey)
else:
return getAPI.getTagGroups()
def getTag(request):
# read in crucial parameters
tagKey = request.GET.get('id', None)
# read in optional parameters and initialize the API
fields = Util.getDelimitedList(request.GET, 'fields')
getAPI = GetAPI(request.user, fields)
#TEST for debugging - logger
logger = logging.getLogger(__name__)
logger.error('logger test - ktcho')
if not tagKey:
raise Errors.NO_TAG_KEY
# the key for lookup and the image it is attached to
return getAPI.getTag(tagKey)
def getImageMetadata(request):
#optional parameters
offset = Util.getInt(request.GET, 'offset', 0)
limit = Util.getInt(request.GET, 'limit', 10)
unlimited = request.GET.get('unlimited', False)
fields = Util.getDelimitedList(request.GET, 'fields')
getAPI = GetAPI(limit, offset, request.user, fields, unlimited)
if request.GET.has_key('by'):
by = request.GET['by']
if by == 'organism':
# required paramaters
organismIds = Util.getDelimitedList(request.GET, 'organismId')
return getAPI.getImageMetadataByOrganism(organismIds)
else:
raise Errors.INVALID_PARAMETER.setCustom('by')
else:
return getAPI.getImageMetadata()
