def test_split_one_front(self):
e3 = gimme.ExonObj('chr1', 500, 700)
self.exons.insert(0, e3)
split = gimme.remove_large_intron(self.exons,
TestSplitExonGroups.max_intron,
)
self.assertEqual(len(split), 2)
def test_split_one_back(self):
e3 = gimme.ExonObj('chr1', 1800, 1900)
self.exons.append(e3)
split = gimme.remove_large_intron(self.exons,
TestSplitExonGroups.max_intron,
)
self.assertEqual(len(split), 2)
def test_no_split_one_exon(self):
self.exons = []
e1 = gimme.ExonObj('chr1', 1000, 1100)
self.exons.append(e1)
split = gimme.remove_large_intron(self.exons,
TestSplitExonGroups.max_intron,
)
self.assertEqual(len(split), 1)
def test_split_two(self):
e3 = gimme.ExonObj('chr1', 1800, 1900)
e4 = gimme.ExonObj('chr1', 2100, 2200)
e5 = gimme.ExonObj('chr1', 3000, 3400)
e6 = gimme.ExonObj('chr1', 3500, 3600)
self.exons += [e3, e4, e5, e6]
split = gimme.remove_large_intron(self.exons,
TestSplitExonGroups.max_intron,
)
self.assertEqual(len(split), 3)
def test_no_split_two_exons(self):
split = gimme.remove_large_intron(self.exons,
TestSplitExonGroups.max_intron,
)
self.assertEqual(len(split), 1)
