# %% Libraries ---------------------- import gl import os # %% General---------------------- #gl.resetdefaults() gl.backcolor(255, 255, 255) # %% background image ---------------------- gl.loadimage('mni152') # %% overlay ---------------------- FILESPATH='D:\\GD_UNICAMP\\IC_NeuroFisica\\Projetos\\fMRI_TLE_2020\\Seed_based_analysis' os.chdir(FILESPATH) networks_names=['DMN','SMOTOR','VISUAL','AUDIT','ECN_L','ECN_R'] netfile_sufx= ['_Group1X','_Group2L','_Group3R','_Group4N'] for net in networks_names: savefolder=FILESPATH + '\\' + net + '\\' for i in netfile_sufx: FILENAME=net+i SEEDFILENAME=net+"_seed" gl.overlaycloseall() gl.overlayload(FILENAME) gl.overlayload(SEEDFILENAME) gl.colorname (2,"3blue") #gl.opacity(1,50)
#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Created on Fri Feb 26 14:25:09 2021 @author: Bryce --- deSCRIPTION --- """ # Testing - run this from 00_Multiple_files directory import gl gl.resetdefaults() gl.backcolor(0, 0, 0) gl.colorbarsize(0.02) gl.cameradistance(0.6) # load main image gl.loadimage('./outputs/LCT1/LCT1_brain.nii.gz') gl.shadername('Standard') gl.shaderadjust('surfaceColor', 1) gl.shaderadjust('brighten', 5) # load overlay 1 gl.overlayload( '/Users/Bryce/Desktop/Postdoc_Scripts/GitHub/04_mosaics_data/00_Multiple_files/outputs/LCT1/LCT1_heatmap.nii.gz' ) gl.overlayloadsmooth(1) gl.minmax(1, 1, 50) gl.colorname(1, "4hot")