def connecting_to_pkl(pkl_name, lvm_filepath):
cue_pkl_file = open(pkl_name, 'rb')
ori = pkl.load(cue_pkl_file)
odor1, odor2, lick, pump, action, airpuff, laser = make_list(lvm_filepath)
print(sum(laser))
dlaser = np.array(diff(laser))
print(sum(np.abs(dlaser)))
odor1_lick, odor2_lick = make_gonogolick(odor1, odor2, lick, delay=200)
odor1_action, odor1_airpuff, odor1_pump, odor1_laser, odor2_action, odor2_airpuff, odor2_pump, odor2_laser = div_by_odor(
odor1, odor2, action, airpuff, pump, laser, delay=200)
lasers = 0
for i in range(np.alen(odor1_laser[:, 1])):
if np.sum(odor1_laser[i, 0:200]) > 10:
lasers += 1
for i in range(np.alen(odor2_laser[:, 1])):
if np.sum(odor2_laser[i, 200]) > 10:
lasers += 1
print(lasers)
print(np.sum(odor1_laser))
print(np.sum(odor2_laser))
odor1_lick = np.delete(odor1_lick, [0, 1, 2, 3, 4, 5, 6, 7], 0)
odor2_lick = np.delete(odor2_lick, [0, 1], 0)
odor1_action = np.delete(odor1_action, [0, 1, 2, 3, 4, 5, 6, 7], 0)
odor1_airpuff = np.delete(odor1_airpuff, [0, 1, 2, 3, 4, 5, 6, 7], 0)
odor1_pump = np.delete(odor1_pump, [0, 1, 2, 3, 4, 5, 6, 7], 0)
odor1_laser = np.delete(odor1_laser, [0, 1, 2, 3, 4, 5, 6, 7], 0)
odor2_action = np.delete(odor2_action, [0, 1], 0)
odor2_airpuff = np.delete(odor2_airpuff, [0, 1], 0)
odor2_pump = np.delete(odor2_pump, [0, 1], 0)
odor2_laser = np.delete(odor2_laser, [0, 1], 0)
print("1")
ori['odor1_lick'] = np.vstack((ori['odor1_lick'], odor1_lick))
ori['odor2_lick'] = np.vstack((ori['odor2_lick'], odor2_lick))
ori['odor1_action'] = np.vstack((ori['odor1_action'], odor1_action))
ori['odor1_airpuff'] = np.vstack((ori['odor1_airpuff'], odor1_airpuff))
ori['odor1_pump'] = np.vstack((ori['odor1_pump'], odor1_pump))
ori['odor1_laser'] = np.vstack((ori['odor1_laser'], odor1_laser))
ori['odor2_action'] = np.vstack((ori['odor2_action'], odor2_action))
ori['odor2_airpuff'] = np.vstack((ori['odor2_airpuff'], odor2_airpuff))
ori['odor2_pump'] = np.vstack((ori['odor2_pump'], odor2_pump))
ori['odor2_laser'] = np.vstack((ori['odor2_laser'], odor2_laser))
tr, ti = np.shape(ori['odor1_lick'])
ntr, nti = np.shape(ori['odor2_lick'])
out_file = open(pkl_name, 'wb')
pkl.dump(ori, out_file)
out_file.close()
cue_pkl_file.close()
print("3")
print(lvm_filepath + " has been added ! now whole odor1 trial number is " +
str(tr) + '. odor2 tn is ' + str(ntr))
return pkl_name
name, _ = raw_file.split(".")
exname = "Raster_of_" + name + ".png"
savepath = "figures/raster"
saved_filelist = os.listdir(savepath)
if exname in saved_filelist:
print("this raster is exist already! Skip" + raw_file)
continue
print(name)
if name in saved_files:
print("already exist, skip " + name)
continue
number, jieduan, day, godor, Hz, *_ = raw_file.split("_")
odor1, odor2, lick, pump, action, airpuff, laser = make_list(filename)
odor1_lick,odor2_lick = make_gonogolick(odor1,odor2,lick,delay=200)
odor1_action, odor1_airpuff, odor1_pump, odor1_laser, odor2_action, odor2_airpuff, odor2_pump, odor2_laser = div_by_odor(odor1,odor2,action,airpuff,pump,laser,delay=200)
# odor1 / odor2_lick_laser/nolaser
# odor1 / odor2_action_laser/nolaser
tr,ti = np.shape(odor1_lick)
tr2, ti2 = np.shape(odor2_lick)
i = 0
for j in range(tr):
while i < ti:
try:
if odor1_lick[j][i] == 1:
odor1_lick[j][i + 1] = 1
odor1_lick[j][i + 2] = 1
import sys, numpy
sys.path.append("C:/Users/manggny/PycharmProjects/Project-pre/func")
import matplotlib.pyplot as plt
from go.funcs import make_list
from go.funcs import make_gonogolick, raster
path = "C:/Users/manggny/Desktop/expdata/block"
file1 = "#3_gonogonolaser_d5_odor2_1.lvm"
nolaser_file = path + '/' + file1
file2 = "#3_gonogolaser_d5_odor2_1.lvm"
laser_file = path + '/' + file2
number, jieduan, day, godor, Hz, *_ = file1.split("_")
odor1, odor2, lick, pump, action, airpuff, laser = make_list(nolaser_file)
lodor1, lodor2, llick, lpump, laction, lairpuff, llaser = make_list(laser_file)
print(file1 + " and " + file2)
laser_odor1_lick, laser_odor2_lick = make_gonogolick(lodor1, lodor2, llick)
nolaser_odor1_lick, nolaser_odor2_lick = make_gonogolick(odor1, odor2, lick)
tr1, ti1 = numpy.shape(laser_odor1_lick)
tr2, ti2 = numpy.shape(laser_odor2_lick)
ntr1, nti1 = numpy.shape(nolaser_odor1_lick)
ntr2, nti2 = numpy.shape(nolaser_odor2_lick)
print(sum(llaser))
print("laser licks:")
print("odor1: %f\nodor2: %f" %
(numpy.sum(laser_odor1_lick[0:int(tr1 / 2), :]),
numpy.sum(laser_odor2_lick[0:int(tr2 / 2), :])))
print("no-laser licks:")
print("odor1: %f\nodor2: %f" %
(numpy.sum(nolaser_odor1_lick[int(ntr1 / 2):int(ntr1), :]),
def make_lvm_to_pkl(lvm_filepath):
resultpath = 'F:/ACC-Camk2/0109~gonogo/gonogopkl'
a = lvm_filepath.split('/')
filename = a[-1]
#print(filename)
name, *_ = filename.split('.')
result_filename = name + '.pkl'
files = os.listdir(resultpath)
if result_filename in files:
print(result_filename + " is already exist! skip~")
return resultpath + '/' + name + '.pkl'
#print(name)
odor1, odor2, lick, pump, action, airpuff, laser = make_list(lvm_filepath)
print(sum(laser))
dlaser = np.array(diff(laser))
print(sum(np.abs(dlaser)))
odor1_lick, odor2_lick = make_gonogolick(odor1, odor2, lick, delay=200)
#print(np.sum(odor1_lick))
odor1_action, odor1_airpuff, odor1_pump, odor1_laser, odor2_action, odor2_airpuff, odor2_pump, odor2_laser = div_by_odor(
odor1, odor2, action, airpuff, pump, laser, delay=200)
# lasers = 0
# for i in range(np.alen(odor1_laser[:,1])):
# if np.sum(odor1_laser[i,0:200]) > 10:
# lasers += 1
# for i in range(np.alen(odor2_laser[:,1])):
# if np.sum(odor2_laser[i,0:200]) > 10:
# lasers += 1
print(np.sum(odor1_laser))
print(np.sum(odor2_laser))
# print(np.sum(np.abs(np.diff(odor1_laser))))
# print(np.sum(np.abs(np.diff(odor2_laser))))
tr, ti = np.shape(odor1_lick)
#print(tr, ti)
odor1_lick = np.delete(odor1_lick, [0, 1, 2, 3, 4, 5, 6, 7], 0)
odor2_lick = np.delete(odor2_lick, [0, 1], 0)
odor1_action = np.delete(odor1_action, [0, 1, 2, 3, 4, 5, 6, 7], 0)
odor1_airpuff = np.delete(odor1_airpuff, [0, 1, 2, 3, 4, 5, 6, 7], 0)
odor1_pump = np.delete(odor1_pump, [0, 1, 2, 3, 4, 5, 6, 7], 0)
odor1_laser = np.delete(odor1_laser, [0, 1, 2, 3, 4, 5, 6, 7], 0)
odor2_action = np.delete(odor2_action, [0, 1], 0)
odor2_airpuff = np.delete(odor2_airpuff, [0, 1], 0)
odor2_pump = np.delete(odor2_pump, [0, 1], 0)
odor2_laser = np.delete(odor2_laser, [0, 1], 0)
result_dict = {
'odor1_lick': odor1_lick,
'odor2_lick': odor2_lick,
'odor1_action': odor1_action,
'odor1_airpuff': odor1_airpuff,
'odor1_pump': odor1_pump,
'odor1_laser': odor1_laser,
'odor2_action': odor2_action,
'odor2_airpuff': odor2_airpuff,
'odor2_pump': odor2_pump,
'odor2_laser': odor2_laser
}
result_filename = resultpath + '/' + name + '.pkl'
output = open(result_filename, 'wb')
pkl.dump(result_dict, output)
#print(result_dict.items())
output.close()
return result_filename
import numpy as np
import pickle as pkl
import sys, os
sys.path.append("C:/Users/manggny/PycharmProjects/Project-pre/func")
from go.funcs import make_list, diff
from go.funcs import div_by_laser, make_gonogolick, div_by_odor
lvm_filepath = 'F:/ACC-Camk2/0109~gonogo/gonogo test with laser/#2_gta_gonogolaser_0118_odor1_2.lvm'
resultpath = 'F:/ACC-Camk2/0109~gonogo/gonogopkl'
#print(name)
odor1, odor2, lick, pump, action, airpuff, laser = make_list(lvm_filepath)
print(sum(laser))
dlaser = np.array(diff(laser))
dodor1 = np.array(diff(odor1))
print(sum(np.abs(dlaser)))
odor1_lick, odor2_lick = make_gonogolick(odor1, odor2, lick, delay=200)
#print(np.sum(odor1_lick))
numpy_ordor = []
odor1_action, odor1_airpuff, odor1_pump, odor1_laser, odor2_action, odor2_airpuff, odor2_pump, odor2_laser = div_by_odor(
odor1, odor2, action, airpuff, pump, laser, delay=200)
for i in range(np.alen(odor1_laser[:, 1])):
if np.sum(odor1_laser[i, 0:200]) > 10:
numpy_ordor.append(1)
else:
numpy_ordor.append(0)
print(numpy_ordor)
