def rend_const():
from gputools.utils.utils import remove_cache_dir, get_cache_dir
remove_cache_dir()
data = (123 * np.ones((100, 100, 100))).astype(np.float32)
rend = VolumeRenderer((4, 4))
rend.render(data, maxVal=200.)
return rend
def rend_const():
from gputools.utils.utils import remove_cache_dir, get_cache_dir
remove_cache_dir()
data = (123*np.ones((100,100,100))).astype(np.float32)
rend = VolumeRenderer((4,4))
rend.render(data, maxVal = 200.)
return rend
def render_iso(data, t = -.8):
from gputools.utils.utils import remove_cache_dir, get_cache_dir
remove_cache_dir()
rend = VolumeRenderer((400,400))
# rend.set_occ_strength(0)
# rend.set_occ_radius(21)
# rend.set_occ_n_points(30)
rend.set_modelView(mat4_translate(0, 0, t))
rend.render(data, maxVal = 130., method="iso_surface")
return rend
def render_iso(data, is_ao=True):
from gputools.utils.utils import remove_cache_dir, get_cache_dir
remove_cache_dir()
rend = VolumeRenderer((400, 400))
if is_ao:
rend.set_occ_strength(1)
rend.set_occ_radius(101)
rend.set_occ_n_points(1000)
else:
rend.set_occ_strength(0)
rend.set_occ_radius(21)
rend.set_occ_n_points(30)
rend.set_modelView(mat4_translate(0, 0, -1.))
rend.render(data, maxVal=70., method="iso_surface")
return rend
def test_simple_rendering():
from gputools.utils.utils import remove_cache_dir, get_cache_dir
remove_cache_dir()
dtypes = [np.float32, np.uint16]
# build some test data
N = 128
x = np.linspace(-1, 1, N)
Z, Y, X = np.meshgrid(x, x, x, indexing="ij")
R1 = np.sqrt((X - .2)**2 + Y**2 + Z**2)
R2 = np.sqrt((X + .2)**2 + Y**2 + Z**2)
data = 255 * np.exp(-30 * R1**2) + np.exp(-30 * R2**2)
rend = VolumeRenderer((400, 400))
outs = []
for dtype in dtypes:
rend.render(data=data.astype(dtype), maxVal=255.)
outs.append(rend.output)
# drawing
plt.figure(1)
plt.clf()
for i, out in enumerate(outs):
plt.subplot(1, len(outs), i + 1)
plt.imshow(out)
plt.axis("off")
plt.title("%s" % (dtype))
plt.pause(.1)
plt.close()
plt.show()
plt.pause(.1)
plt.close()
return rend
def test_simple_rendering():
from gputools.utils.utils import remove_cache_dir, get_cache_dir
remove_cache_dir()
dtypes = [np.float32, np.uint16]
# build some test data
N = 128
x = np.linspace(-1,1,N)
Z,Y,X = np.meshgrid(x,x,x,indexing="ij")
R1 = np.sqrt((X-.2)**2+Y**2+Z**2)
R2 = np.sqrt((X+.2)**2+Y**2+Z**2)
data = 255*np.exp(-30*R1**2)+ np.exp(-30*R2**2)
rend = VolumeRenderer((400,400))
outs = []
for dtype in dtypes:
rend.render(data=data.astype(dtype), maxVal = 255.)
outs.append(rend.output)
# drawing
plt.figure(1)
plt.ion()
plt.clf()
for i,out in enumerate(outs):
plt.subplot(1,len(outs),i+1)
plt.imshow(out)
plt.axis("off")
plt.title("%s"%(dtype))
plt.pause(.1)
plt.show()
plt.pause(1.)
plt.close()
return rend
# np.float32(1),
# np.float32(1),
# np.float32(1),
# np.int32(1),
# np.int32(1),
# d.data,
# d.data,
# im)
#
# print(out.get())
if __name__ == '__main__':
from spimagine.volumerender.volumerender import VolumeRenderer
from gputools.utils.utils import remove_cache_dir, get_cache_dir
remove_cache_dir()
data = (123 * np.ones((10, 10, 10))).astype(np.float32)
rend = VolumeRenderer((4, 4))
rend.proc = OCLProgram("/Users/mweigert/python/spimagine/spimagine/volumerender/kernels/all_render_kernels.cl",
build_options=
["-I", "/Users/mweigert/python/spimagine/spimagine/volumerender/kernels",
"-D", "maxSteps=100",
"-D","QUALIFIER_CONSTANT_TO_GLOBAL"
"-cl-finite-math-only",
"-cl-fast-relaxed-math",
"-cl-unsafe-math-optimizations",
"-cl-mad-enable"])
# rend.set_occ_strength(0)
# rend.set_occ_radius(21)
# rend.set_occ_n_points(30)
rend.set_modelView(mat4_translate(0, 0, t))
rend.render(data, maxVal = 130., method="iso_surface")
return rend
if __name__ == "__main__":
from gputools import remove_cache_dir
remove_cache_dir()
# build some test data
N = 128
x = np.linspace(-1,1,N)
Z,Y,X = np.meshgrid(x,x,x,indexing="ij")
R1 = np.sqrt((X-.2)**2+Y**2+Z**2)
R2 = np.sqrt((X+.2)**2+Y**2+Z**2)
data = 255*(np.exp(-30*R1**2)+ np.exp(-30*R2**2))
data += np.random.uniform(0,1,data.shape)
rend = render_iso(data, t = -0.83157894736842108)