def get_compile_msgs (request):
log = request.REQUEST ['log']
logger.debug ("getting compilation messages: log=%s", log)
process_username = ViewUtil.get_os_username ()
text = GraysonUtil.readFileAsString (log)
text = unicode (text.replace ('\n', '<br/>')) if text else 'An unknown error occurred compiling the model.'
return ViewUtil.get_text_response (text)
def get_flow_file (request):
username = ''
if 'addUser' in request.REQUEST:
user = ViewUtil.get_user (request)
username = user.username
path = os.path.join (settings.GRAYSONWEB_WORKFLOW_ROOT, username, request.REQUEST ['path'])
text = GraysonUtil.readFileAsString (path) if os.path.exists (path) else ''
print ("path: %s", path)
return ViewUtil.get_text_response (text)
def get_job_output (request):
user = ViewUtil.get_user (request)
workdir = request.REQUEST ['workdir']
workflow_id = request.REQUEST ['workflowid']
job_id = request.REQUEST ['jobid']
run_id = request.REQUEST ['runid']
if not run_id:
run_id = ""
if not workflow_id:
workflow_id = ""
logger.debug ("getting job output: workdir=%s, workflowid: %s, runid: %s, jobid: %s", workdir, workflow_id, run_id, job_id)
process_username = ViewUtil.get_os_username ()
workdirPath = GraysonUtil.form_workdir_path (workdir, process_username, workflow_id, run_id)
workdirPath = ViewUtil.form_workflow_path (user, workdirPath)
logger.debug ("workdirPath: %s", workdirPath)
text = ""
if job_id.startswith ('/'):
job_id = job_id [1:]
concrete = os.path.join (workdirPath, job_id)
logger.debug ('concrete: --- %s', concrete)
if os.path.exists (concrete):
logger.debug ("concrete --- : %s", concrete)
text = GraysonUtil.readFile (concrete)
else:
logger.debug ("regex: --- : %s", concrete)
workflow = GridWorkflow (workdirPath)
outputs = workflow.getOutputFiles (subworkflows = [ workdirPath ], item = job_id)
jobOutput = None
if outputs and len (outputs) > 0:
jobOutput = outputs [0]
logger.debug ("got job output: %s \n for job_id: %s", jobOutput, job_id)
if jobOutput:
text = GraysonUtil.readFileAsString (jobOutput)
return ViewUtil.get_text_response (text)
def get_workflow (request):
workflow = request.REQUEST ['workflow']
user = ViewUtil.get_user (request)
workflowPath = ViewUtil.form_workflow_path (user, workflow)
text = GraysonUtil.readFileAsString (workflowPath)
return HttpResponse (text, GraysonWebConst.MIME_XML, 200, GraysonWebConst.MIME_XML)
