class simpleStageJob(action):
def __init__(self, si, subLoc=defaultSubLoc):
super(simpleStageJob, self).__init__(si, subLoc)
self.job = JobObject(self.si)
self.job.setCommandline('echo "hello world"')
self.job.setApplication(Constants.GENERIC_APPLICATION_NAME)
self.job.setSubmissionLocation(self.subLoc)
def prepare(self):
self.job.setUniqueJobname(self.name())
self.job.createJob()
def execute(self):
self.job.submitJob()
class simpleStageJob(action):
def __init__(self, si, subLoc=defaultSubLoc):
super(simpleStageJob, self).__init__(si, subLoc)
self.job = JobObject(self.si)
self.job.setCommandline("echo \"hello world\"")
self.job.setApplication(Constants.GENERIC_APPLICATION_NAME)
self.job.setSubmissionLocation(self.subLoc)
def prepare(self):
self.job.setUniqueJobname(self.name())
self.job.createJob()
def execute(self):
self.job.submitJob()
def submit(self):
if self.jobs:
print 'There is already a run with the name "'+self.jobname+'". Exiting...'
sys.exit(1)
# uploading input file once, so we don't need to do it for every job again and again
fm.cp(self.filepath, 'gsiftp://pan.nesi.org.nz/~/inputfiles/'+self.jobname, True)
for i in range(0,self.runs):
# create the job object
job = JobObject(si);
# set a unique jobname
number = str(i+1).zfill(4)
job.setUniqueJobname(self.jobname+"_run_"+number)
# set the commandline that needs to be executed
job.setCommandline(megabeast_path+' '+remote_home_dir+'/inputfiles/'+self.jobname+'/'+self.filename)
job.setSubmissionLocation('pan:pan.nesi.org.nz')
job.setCpus(self.cpus)
job.setWalltime(self.walltime)
job.setMemory(self.memory)
job.setApplication('UltraBEAST')
job.setApplicationVersion('0.1')
#job.addInputFileUrl(self.filepath)
# create the job on the backend and specify the VO to use
temp_jobname = job.createJob("/nz/nesi")
print "created job: '"+temp_jobname+"', submitting..."
# submit the job
job.submitJob()
print "submission finished: " + temp_jobname
if not si:
LoginManager.initEnvironment()
si = LoginManager.login('bestgrid', True)
filemanager = GrisuRegistryManager.getDefault(si).getFileManager()
job = JobObject(si)
job.setSubmissionLocation('pan:pan.nesi.org.nz')
job.setTimestampJobname(jobname_template)
job.setCommandline(commandline)
# add input files
for file in files_to_upload:
job.addInputFileUrl(file)
jobname = job.createJob('/nz/nesi')
print 'Submitting job...'
job.submitJob()
print 'Jobname: ' + jobname
print 'Waiting for job to finish...'
job.waitForJobToFinish(jobstate_check_intervall)
job_directory = job.getJobDirectoryUrl()
print 'Job finished, jobdirectory: ' + job_directory
print 'Downloading results'
target = filemanager.downloadUrl(job_directory, File(target_dir), False)
print 'Download finished, download folder: ' + target.getPath()
from grisu.frontend.control.login import LoginManager
from grisu.frontend.model.job import JobObject
si = LoginManager.loginCommandline("BeSTGRID-DEV")
print "Logged in."
job = JobObject(si)
job.setUniqueJobname("cat_job", si)
job.setCommandline("cat text0.txt")
job.addInputFileUrl("/home/markus/tmp/text0.txt")
job.createJob("/nz/nesi")
# job.setSubmissionLocation('[email protected]:ng2.auckland.ac.nz')
job.submitJob()
print "Job submitted."
job.waitForJobToFinish(10)
print "Job finished. Status: " + job.getStatusString(False)
print "Stdout: " + job.getStdOutContent()
print "Stderr: " + job.getStdErrContent()
job.kill(True)
from grisu.frontend.control.login import LoginManager
from grisu.frontend.model.job import JobObject
from grisu.model import GrisuRegistryManager
si = LoginManager.loginCommandline("LOCAL")
appInfo = GrisuRegistryManager.getDefault(si).getApplicationInformation("ImageJ")
print 'app: '+appInfo.getApplicationName()
for subloc in appInfo.getAvailableAllSubmissionLocations():
print subloc
job = JobObject(si);
job.setTimestampJobname("imageJ");
job.setApplication("java");
job.setApplication("ImageJ");
job.setCommandline("echo Hello");
job.setSubmissionLocation("normal:ng2.ivec.org");
job.createJob("/ARCS/StartUp");
job.submitJob();
job.waitForJobToFinish(3);
print "Stdout: "+job.getStdOutContent()
print "Stderr: "+job.getStdErrContent()
