def _importTrackFromFile(self, genome, path, name):
"""
Import track from file into GTrackCore
:param path:
:return:
"""
importFile(path, 'hg19', name)
def _importTrack(self):
"""
Loads all gtrack files in the test_tracks folder into GTrackCore.
Will ignore tracks already in GTrackCore.
"""
genome = 'hg18'
for path in glob.glob("./test_tracks/*.gtrack"):
name = os.path.splitext(path.split('/')[-1])[0]
if not self._trackInGtrack(genome, name):
importFile(path, genome, name)
else:
print("Track already imported into gtrack")
def importTrackIntoGTrack(trackName, genome, path):
"""
Load a gtrack tabular file into GTrackCore.
:param trackName:
:param genome:
:param path:
:return:
"""
if not isTrackInGtrack(genome.name, trackName):
print("not in gtrack")
importFile(path, genome.name, trackName)
else:
print("in gtrack")
def create_track(file_name, trackName):
from gtrackcore.core.Api import importFile
importFile(file_name, genome="hg18", trackName=trackName)
t = PlainTrack([trackName])
single_track_ts = SingleTrackTS(t, {"title": trackName})
return single_track_ts
