def setupCommonStyle(line, marker):
markerSymbol = "Ellipse" # in this case a circle, because we give only one size parameter.
edgeColor = "#555555"
faceColor = "#cc0000"
alpha = 0.8
size = 6
params = {
"marker/cross/symbol/marker": markerSymbol,
"marker/cross/symbol/edgecolor": edgeColor,
"marker/cross/symbol/facecolor": faceColor,
"marker/cross/symbol/alpha": alpha,
"marker/cross/symbol/size": size,
"marker/cross/line/color": "#000000",
#"marker/cross/line/width": 0.0,
"marker/cross/line/style": "NoPen",
}
CONF.update_defaults(dict(plot=params))
marker.markerparam.read_config(CONF, "plot", "marker/cross")
marker.markerparam.update_marker(marker)
params = {
"shape/drag/symbol/marker": markerSymbol,
"shape/drag/symbol/size": size,
"shape/drag/symbol/edgecolor": edgeColor,
"shape/drag/symbol/facecolor": faceColor,
"shape/drag/symbol/alpha": alpha,
}
CONF.update_defaults(dict(plot=params))
line.shapeparam.read_config(CONF, "plot", "shape/drag")
line.shapeparam.update_shape(line)
def setupStyleRangeMarker(range_):
params = {
"range/line/style": 'SolidLine',
"range/line/color": "gray", # "#ff9393",
"range/line/width": 1,
"range/sel_line/style": 'SolidLine',
"range/sel_line/color": "gray", # "red",
"range/sel_line/width": 1 + 0 * 2,
"range/fill": "gray",
"range/shade": 0.10,
"range/symbol/marker": "Ellipse",
"range/symbol/size": 7 + 1,
"range/symbol/edgecolor": "white",
"range/symbol/facecolor": "gray", # "#ff9393",
"range/symbol/alpha": 1 - 0.2,
"range/sel_symbol/marker": "Ellipse",
"range/sel_symbol/size": 9 - 1,
"range/sel_symbol/edgecolor": "white",
"range/sel_symbol/facecolor": "gray", # "red",
"range/sel_symbol/alpha": .9,
"range/multi/color": "#806060",
}
CONF.update_defaults(dict(histogram=params))
range_.shapeparam.read_config(CONF, "histogram", "range")
range_.shapeparam.update_range(range_)
def setupStyleRangeMarker(range_):
params = {
"range/line/style" : 'SolidLine',
"range/line/color" : "gray", # "#ff9393",
"range/line/width" : 1,
"range/sel_line/style" : 'SolidLine',
"range/sel_line/color" : "gray", # "red",
"range/sel_line/width" : 1 + 0* 2,
"range/fill" : "gray",
"range/shade" : 0.10,
"range/symbol/marker" : "Ellipse",
"range/symbol/size" : 7+1,
"range/symbol/edgecolor" : "white",
"range/symbol/facecolor" : "gray", # "#ff9393",
"range/symbol/alpha" : 1 - 0.2,
"range/sel_symbol/marker" : "Ellipse",
"range/sel_symbol/size" : 9-1,
"range/sel_symbol/edgecolor" : "white",
"range/sel_symbol/facecolor" : "gray", # "red",
"range/sel_symbol/alpha" : .9,
"range/multi/color" : "#806060",
}
CONF.update_defaults(dict(histogram=params))
range_.shapeparam.read_config(CONF, "histogram", "range")
range_.shapeparam.update_range(range_)
def setupCommonStyle(line, marker):
markerSymbol = "Ellipse" # in this case a circle, because we give only one size parameter.
edgeColor = "#555555"
faceColor = "#cc0000"
alpha = 0.8
size = 6
params = {
"marker/cross/symbol/marker": markerSymbol,
"marker/cross/symbol/edgecolor": edgeColor,
"marker/cross/symbol/facecolor": faceColor,
"marker/cross/symbol/alpha": alpha,
"marker/cross/symbol/size": size,
"marker/cross/line/color" : "#000000",
#"marker/cross/line/width": 0.0,
"marker/cross/line/style": "NoPen",
}
CONF.update_defaults(dict(plot=params))
marker.markerparam.read_config(CONF, "plot", "marker/cross")
marker.markerparam.update_marker(marker)
params = {
"shape/drag/symbol/marker": markerSymbol,
"shape/drag/symbol/size": size,
"shape/drag/symbol/edgecolor": edgeColor,
"shape/drag/symbol/facecolor": faceColor,
"shape/drag/symbol/alpha": alpha,
"shape/drag/line/color": "#555555",
}
CONF.update_defaults(dict(plot=params))
line.shapeparam.read_config(CONF, "plot", "shape/drag")
line.shapeparam.update_shape(line)
def create_peakmap_labels(self):
plot = self.widget.plot
rect_marker = RectangleShape()
rect_label = make.info_label("TR", [PeakmapCursorRangeInfo(rect_marker)], title=None)
rect_label.labelparam.label = ""
rect_label.setVisible(1)
plot.rect_label = rect_label
plot.add_item(rect_label)
params = {
"shape/drag/symbol/size": 0,
"shape/drag/line/color": "#cccccc",
"shape/drag/line/width": 1.5,
"shape/drag/line/alpha": 0.4,
"shape/drag/line/style": "SolidLine",
}
CONF.update_defaults(dict(plot=params))
rect_marker.shapeparam.read_config(CONF, "plot", "shape/drag")
rect_marker.shapeparam.update_shape(rect_marker)
rect_marker.setVisible(0)
rect_marker.set_rect(0, 0, np.nan, np.nan)
plot.add_item(rect_marker)
plot.canvas_pointer = True # x-cross marker on
# we hack label_cb for updating legend:
def label_cb(rt, mz):
# passing None here arives as np.nan if you call get_rect later, so we use
# np.nan here:
rect_marker.set_rect(rt, mz, np.nan, np.nan)
return ""
cross_marker = plot.cross_marker
cross_marker.label_cb = label_cb
params = {
"marker/cross/line/color": "#cccccc",
"marker/cross/line/width": 1.5,
"marker/cross/line/alpha": 0.4,
"marker/cross/line/style": "DashLine",
"marker/cross/symbol/marker": "NoSymbol",
"marker/cross/markerstyle": "Cross",
}
CONF.update_defaults(dict(plot=params))
cross_marker.markerparam.read_config(CONF, "plot", "marker/cross")
cross_marker.markerparam.update_marker(cross_marker)
self.cross_marker = cross_marker
self.rect_marker = rect_marker
def create_peakmap_labels(plot):
rect_marker = RectangleShape()
rect_label = make.info_label("TR", [PeakmapCursorRangeInfo(rect_marker)],
title=None)
rect_label.labelparam.label = ""
rect_label.labelparam.font.size = 12
rect_label.labelparam.update_label(rect_label)
rect_label.setVisible(1)
plot.rect_label = rect_label
plot.add_item(rect_label)
params = {
"shape/drag/symbol/size": 0,
"shape/drag/line/color": "#cccccc",
"shape/drag/line/width": 1.5,
"shape/drag/line/alpha": 0.4,
"shape/drag/line/style": "SolidLine",
}
CONF.update_defaults(dict(plot=params))
rect_marker.shapeparam.read_config(CONF, "plot", "shape/drag")
rect_marker.shapeparam.update_shape(rect_marker)
rect_marker.setVisible(0)
rect_marker.set_rect(0, 0, np.nan, np.nan)
plot.add_item(rect_marker)
plot.canvas_pointer = True # x-cross marker on
# we hack label_cb for updating legend:
def label_cb(rt, mz):
# passing None here arives as np.nan if you call get_rect later, so we use
# np.nan here:
rect_marker.set_rect(rt, mz, np.nan, np.nan)
return ""
cross_marker = plot.cross_marker
cross_marker.label_cb = label_cb
params = {
"marker/cross/line/color": "#cccccc",
"marker/cross/line/width": 1.5,
"marker/cross/line/alpha": 0.4,
"marker/cross/line/style": "DashLine",
"marker/cross/symbol/marker": "NoSymbol",
"marker/cross/markerstyle": "Cross",
}
CONF.update_defaults(dict(plot=params))
cross_marker.markerparam.read_config(CONF, "plot", "marker/cross")
cross_marker.markerparam.update_marker(cross_marker)
def setupStyleRtMarker(marker):
linecolor = "#909090"
edgeColor = "#005500"
faceColor = "#005500"
params = {
"marker/cross/symbol/marker": "Rect",
"marker/cross/symbol/size": 0,
"marker/cross/symbol/edgecolor": edgeColor,
"marker/cross/symbol/facecolor": faceColor,
"marker/cross/line/color": linecolor,
"marker/cross/line/width": 1.0,
"marker/cross/line/style": "SolidLine",
"marker/cross/sel_symbol/size": 0,
"marker/cross/sel_line/color": linecolor,
"marker/cross/sel_line/width": 1.0,
"marker/cross/sel_line/style": "SolidLine",
}
CONF.update_defaults(dict(plot=params))
marker.markerparam.read_config(CONF, "plot", "marker/cross")
marker.markerparam.update_marker(marker)
def setupStyleRtMarker(marker):
linecolor = "#909090"
edgeColor = "#005500"
faceColor = "#005500"
params = {
"marker/cross/symbol/marker": "Rect",
"marker/cross/symbol/size": 0,
"marker/cross/symbol/edgecolor": edgeColor,
"marker/cross/symbol/facecolor": faceColor,
"marker/cross/line/color" : linecolor,
"marker/cross/line/width": 1.0,
"marker/cross/line/style": "SolidLine",
"marker/cross/sel_symbol/size": 0,
"marker/cross/sel_line/color" : linecolor,
"marker/cross/sel_line/width": 1.0,
"marker/cross/sel_line/style": "SolidLine",
}
CONF.update_defaults(dict(plot=params))
marker.markerparam.read_config(CONF, "plot", "marker/cross")
marker.markerparam.update_marker(marker)
import rrpam_wds
import rrpam_wds.constants as c
from rrpam_wds.gui import monkey_patch_guiqwt_guidata
# there are some changes to the guiqwt classes to be done. It is not easy to do this by subclassing, as
# we need to use make.* facotry.
monkey_patch_guiqwt_guidata._patch_all()
# show guiqwt where the images are.
add_image_module_path("rrpam_wds.gui", "images")
# this how we change an option
# if there is not .config directory in the home directory, create it.
configfile = os.path.join(c.HOMEDIR, '.config')
if (os.path.isfile(configfile) and (not os.path.isdir(configfile))):
os.unlink(configfile)
if (not os.path.isdir(configfile)):
os.mkdir(configfile)
DEFAULTS = {
'plot': {
"selection/distance": 10,
}
}
CONF.update_defaults(DEFAULTS)
CONF.set_application("rrpamwds", version=rrpam_wds.__version__)
def save():
CONF.save()
