def do_plot_3d(self):
"""
:return:
"""
# color: get R, G, B
status, rgb_values = guiutility.parse_float_editors([self.ui.lineEdit_baseColorRed,
self.ui.lineEdit_baseColorGreen,
self.ui.lineEdit_baseColorBlue])
assert status
# set the color to get change
change_r = self.ui.checkBox_changeRed.isChecked()
change_g = self.ui.checkBox_changeGreen.isChecked()
change_b = self.ui.checkBox_changeBlue.isChecked()
# get threshold
status, thresholds = guiutility.parse_integers_editors([self.ui.lineEdit_countsThresholdLower,
self.ui.lineEdit_countsThresholdUpper],
allow_blank=True)
assert status, thresholds
if thresholds[0] is None:
thresholds[0] = 0
if thresholds[1] is None:
thresholds[1] = sys.maxint
assert 0 <= thresholds[0] < thresholds[1]
# data key
data_key = int(self.ui.comboBox_dataKey.currentText())
# plot
self.plot_3d(data_key, rgb_values, thresholds, [change_r, change_g, change_b])
return
def set_calibration_to_reduction_controller(self, exp_number):
"""set user-specified instrument calibrations to the my controller
:param exp_number:
:return:
"""
# set up the experiment number if it is different
if exp_number != self._myController.get_experiment():
self._myController.set_exp_number(exp_number)
self._myController.set_default_detector_sample_distance(0.3750)
self._myController.set_default_pixel_number(256, 256)
# set up the calibration
# wave length
user_wavelength_str = str(self.ui.lineEdit_infoWavelength.text()).strip()
if len(user_wavelength_str) > 0:
try:
user_wavelength = float(user_wavelength_str)
self._myController.set_user_wave_length(exp_number, user_wavelength)
except ValueError:
gui_util.show_message(self, '[ERROR] User-specified wave length {0} cannot be converted to float.'
''.format(user_wavelength_str))
return
# END-IF
# detector center
user_det_center_str = str(self.ui.lineEdit_infoDetCenter.text()).strip()
user_det_center_str = user_det_center_str.replace('x', ',')
if len(user_det_center_str) > 0:
try:
det_center = gui_util.parse_integer_list(user_det_center_str, 2)
except RuntimeError as run_err:
gui_util.show_message(self, 'Unable to parse detector center {0} due to {1}'
''.format(user_det_center_str, run_err))
return
self._myController.set_detector_center(exp_number, det_center[0], det_center[1])
# END-IF
# detector sample distance
status, ret_obj = gui_util.parse_float_editors([self.ui.lineEdit_infoDetSampleDistance], allow_blank=True)
if not status:
error_message = ret_obj
gui_util.show_message(self, '[ERROR] {0}'.format(error_message))
return
user_det_sample_distance = ret_obj[0]
if user_det_sample_distance is not None:
self._myController.set_detector_sample_distance(exp_number, user_det_sample_distance)
# detector size
curr_det_size_index = self.ui.comboBox_detSize.currentIndex()
if curr_det_size_index > 2:
gui_util.show_message(self, 'Detector {0} is not supported by now!'
''.format(str(self.ui.comboBox_detSize.currentText())))
return
det_size = [256, 512][curr_det_size_index]
self._myController.set_detector_geometry(det_size, det_size)
return
def do_select_scans(self):
"""
:return:
"""
# get check box
if self.ui.checkBox_selectAllPeaks.isChecked():
self._myParent.select_ub_scans(select_all=True)
else:
select_args = dict()
if self.ui.checkBox_selectNuclearPeaks.isChecked():
status, ret_obj = guiutility.parse_float_editors(
[self.ui.lineEdit_nuclearPeaksTolerance],
allow_blank=False)
if not status:
raise RuntimeError(ret_obj)
hkl_tol = ret_obj[0]
select_args['nuclear_peaks'] = True
select_args['hkl_tolerance'] = hkl_tol
if self.ui.checkBox_wavelength.isChecked():
# wave length selection
status, ret_obj = guiutility.parse_float_editors(
[
self.ui.lineEdit_wavelength,
self.ui.lineEdit_wavelengthTolerance
],
allow_blank=False)
if status:
wave_length, wave_length_tol = ret_obj
select_args['wavelength'] = wave_length
select_args['wavelength_tolerance'] = wave_length_tol
else:
select_args['wavelength'] = None
# select with filters
self._myParent.ub_matrix_processing_table.select_scans(
**select_args)
# END-IF-ELSE
return
def do_add_ub_peak(self):
""" Add current to ub peaks
:return:
"""
# Add peak
status, int_list = gutil.parse_integers_editors([
self.ui.lineEdit_exp, self.ui.lineEdit_scanNumber,
self.ui.lineEdit_ptNumber
])
if status is False:
self.pop_one_button_dialog(int_list)
exp_no, scan_no, pt_no = int_list
# Get HKL from GUI
status, float_list = gutil.parse_float_editors(
[self.ui.lineEdit_H, self.ui.lineEdit_K, self.ui.lineEdit_L])
if status is False:
err_msg = float_list
self.pop_one_button_dialog(err_msg)
return
h, k, l = float_list
status, peak_info_obj = self._myControl.get_peak_info(
exp_no, scan_no, pt_no)
if status is False:
error_message = peak_info_obj
self.pop_one_button_dialog(error_message)
return
assert isinstance(peak_info_obj, r4c.PeakInfo)
if self.ui.checkBox_roundHKLInt.isChecked():
h = math.copysign(1, h) * int(abs(h) + 0.5)
k = math.copysign(1, k) * int(abs(k) + 0.5)
l = math.copysign(1, l) * int(abs(l) + 0.5)
peak_info_obj.set_user_hkl(h, k, l)
self.set_ub_peak_table(peak_info_obj)
# Clear
self.ui.lineEdit_scanNumber.setText('')
self.ui.lineEdit_ptNumber.setText('')
self.ui.lineEdit_sampleQx.setText('')
self.ui.lineEdit_sampleQy.setText('')
self.ui.lineEdit_sampleQz.setText('')
self.ui.lineEdit_H.setText('')
self.ui.lineEdit_K.setText('')
self.ui.lineEdit_L.setText('')
return
def do_add_ub_peak(self):
""" Add current to ub peaks
:return:
"""
# Add peak
status, int_list = gutil.parse_integers_editors([self.ui.lineEdit_exp,
self.ui.lineEdit_scanNumber,
self.ui.lineEdit_ptNumber])
if status is False:
self.pop_one_button_dialog(int_list)
exp_no, scan_no, pt_no = int_list
# Get HKL from GUI
status, float_list = gutil.parse_float_editors([self.ui.lineEdit_H,
self.ui.lineEdit_K,
self.ui.lineEdit_L])
if status is False:
err_msg = float_list
self.pop_one_button_dialog(err_msg)
return
h, k, l = float_list
status, peak_info_obj = self._myControl.get_peak_info(exp_no, scan_no, pt_no)
if status is False:
error_message = peak_info_obj
self.pop_one_button_dialog(error_message)
return
assert isinstance(peak_info_obj, r4c.PeakInfo)
if self.ui.checkBox_roundHKLInt.isChecked():
h = math.copysign(1, h)*int(abs(h)+0.5)
k = math.copysign(1, k)*int(abs(k)+0.5)
l = math.copysign(1, l)*int(abs(l)+0.5)
peak_info_obj.set_user_hkl(h, k, l)
self.set_ub_peak_table(peak_info_obj)
# Clear
self.ui.lineEdit_scanNumber.setText('')
self.ui.lineEdit_ptNumber.setText('')
self.ui.lineEdit_sampleQx.setText('')
self.ui.lineEdit_sampleQy.setText('')
self.ui.lineEdit_sampleQz.setText('')
self.ui.lineEdit_H.setText('')
self.ui.lineEdit_K.setText('')
self.ui.lineEdit_L.setText('')
return
def _get_lattice_parameters(self):
"""
Get lattice parameters from GUI
:return: (Boolean, Object). True, 6-tuple as a, b, c, alpha, beta, gamm
False: error message
"""
status, ret_list = gutil.parse_float_editors([
self.ui.lineEdit_a, self.ui.lineEdit_b, self.ui.lineEdit_c,
self.ui.lineEdit_alpha, self.ui.lineEdit_beta,
self.ui.lineEdit_gamma
])
if status is False:
err_msg = ret_list
err_msg = 'Unable to parse unit cell due to %s' % err_msg
return False, err_msg
a, b, c, alpha, beta, gamma = ret_list
return True, (a, b, c, alpha, beta, gamma)
def _get_lattice_parameters(self):
"""
Get lattice parameters from GUI
:return: (Boolean, Object). True, 6-tuple as a, b, c, alpha, beta, gamm
False: error message
"""
status, ret_list = gutil.parse_float_editors([self.ui.lineEdit_a,
self.ui.lineEdit_b,
self.ui.lineEdit_c,
self.ui.lineEdit_alpha,
self.ui.lineEdit_beta,
self.ui.lineEdit_gamma])
if status is False:
err_msg = ret_list
err_msg = 'Unable to parse unit cell due to %s' % err_msg
return False, err_msg
a, b, c, alpha, beta, gamma = ret_list
return True, (a, b, c, alpha, beta, gamma)
def do_plot_3d(self):
"""
:return:
"""
# color: get R, G, B
status, rgb_values = guiutility.parse_float_editors([
self.ui.lineEdit_baseColorRed, self.ui.lineEdit_baseColorGreen,
self.ui.lineEdit_baseColorBlue
])
assert status
# set the color to get change
change_r = self.ui.checkBox_changeRed.isChecked()
change_g = self.ui.checkBox_changeGreen.isChecked()
change_b = self.ui.checkBox_changeBlue.isChecked()
# get threshold
status, thresholds = guiutility.parse_integers_editors(
[
self.ui.lineEdit_countsThresholdLower,
self.ui.lineEdit_countsThresholdUpper
],
allow_blank=True)
assert status, thresholds
if thresholds[0] is None:
thresholds[0] = 0
if thresholds[1] is None:
thresholds[1] = sys.maxint
assert 0 <= thresholds[0] < thresholds[1]
# data key
data_key = int(self.ui.comboBox_dataKey.currentText())
# plot
self.plot_3d(data_key, rgb_values, thresholds,
[change_r, change_g, change_b])
return
def set_calibration_to_reduction_controller(self, exp_number):
"""set user-specified instrument calibrations to the my controller
:param exp_number:
:return:
"""
# set up the experiment number if it is different
if exp_number != self._myController.get_experiment():
self._myController.set_exp_number(exp_number)
self._myController.set_default_detector_sample_distance(0.3750)
self._myController.set_default_pixel_number(256, 256)
# set up the calibration
# wave length
user_wavelength_str = str(
self.ui.lineEdit_infoWavelength.text()).strip()
if len(user_wavelength_str) > 0:
try:
user_wavelength = float(user_wavelength_str)
self._myController.set_user_wave_length(
exp_number, user_wavelength)
except ValueError:
gui_util.show_message(
self,
'[ERROR] User-specified wave length {0} cannot be converted to float.'
''.format(user_wavelength_str))
return
# END-IF
# detector center
user_det_center_str = str(
self.ui.lineEdit_infoDetCenter.text()).strip()
user_det_center_str = user_det_center_str.replace('x', ',')
if len(user_det_center_str) > 0:
try:
det_center = gui_util.parse_integer_list(
user_det_center_str, 2)
except RuntimeError as run_err:
gui_util.show_message(
self, 'Unable to parse detector center {0} due to {1}'
''.format(user_det_center_str, run_err))
return
self._myController.set_detector_center(exp_number, det_center[0],
det_center[1])
# END-IF
# detector sample distance
status, ret_obj = gui_util.parse_float_editors(
[self.ui.lineEdit_infoDetSampleDistance], allow_blank=True)
if not status:
error_message = ret_obj
gui_util.show_message(self, '[ERROR] {0}'.format(error_message))
return
user_det_sample_distance = ret_obj[0]
if user_det_sample_distance is not None:
self._myController.set_detector_sample_distance(
exp_number, user_det_sample_distance)
# detector size
curr_det_size_index = self.ui.comboBox_detSize.currentIndex()
if curr_det_size_index > 2:
gui_util.show_message(
self, 'Detector {0} is not supported by now!'
''.format(str(self.ui.comboBox_detSize.currentText())))
return
det_size = [256, 512][curr_det_size_index]
self._myController.set_detector_geometry(det_size, det_size)
return