def main():
"""Entry point to the script."""
# Basic parsing of command line arguments to allow a filename
# to be passed when running this code in the debugger.
file_handle = sys.stdin
if 2 <= len(sys.argv):
file_handle = open(sys.argv[1], "r")
expander = GvcfExpander(bin_size=1000,
filter_ref_matches=False,
emit_ref_blocks=False)
line = file_handle.readline()
while line:
line = line.strip()
if not line:
line = file_handle.readline()
continue
if BIG_QUERY_SOURCE:
(key, value) = line.split("\t")
fields = json.loads(value)
else:
fields = json.loads(line)
pairs = expander.map(fields=fields)
for pair in pairs:
emit(pair.k, pair.v)
line = file_handle.readline()
def main():
"""Entry point to the script."""
# Basic parsing of command line arguments to allow a filename
# to be passed when running this code in the debugger.
file_handle = sys.stdin
if 2 <= len(sys.argv):
file_handle = open(sys.argv[1], "r")
expander = GvcfExpander()
line = file_handle.readline()
while line:
line = line.strip()
if not line:
line = file_handle.readline()
continue
fields = json.loads(line)
pairs = expander.map(fields=fields)
for pair in pairs:
emit(pair.k, pair.v)
line = file_handle.readline()
def main():
"""Entry point to the script."""
# Basic parsing of command line arguments to allow a filename
# to be passed when running this code in the debugger.
file_handle = sys.stdin
if 2 <= len(sys.argv):
file_handle = open(sys.argv[1], "r")
expander = GvcfExpander()
line = file_handle.readline()
while line:
line = line.strip()
if not line:
line = file_handle.readline()
continue
fields = json.loads(line)
pairs = expander.map(fields=fields)
for pair in pairs:
emit(pair.k, pair.v)
line = file_handle.readline()
def main():
"""Entry point to the script."""
# Basic parsing of command line arguments to allow a filename
# to be passed when running this code in the debugger.
file_handle = sys.stdin
if 2 <= len(sys.argv):
file_handle = open(sys.argv[1], "r")
expander = GvcfExpander(bin_size=1000, filter_ref_matches=False, emit_ref_blocks=False)
line = file_handle.readline()
while line:
line = line.strip()
if not line:
line = file_handle.readline()
continue
if BIG_QUERY_SOURCE:
(key, value) = line.split("\t")
fields = json.loads(value)
else:
fields = json.loads(line)
pairs = expander.map(fields=fields)
for pair in pairs:
emit(pair.k, pair.v)
line = file_handle.readline()
def main():
"""Entry point to the script."""
# Basic parsing of command line arguments to allow a filename
# to be passed when running this code in the debugger.
file_handle = sys.stdin
if 2 <= len(sys.argv):
file_handle = open(sys.argv[1], "r")
expander = GvcfExpander(bin_size=1000,
filter_ref_matches=False,
emit_ref_blocks=False)
line = file_handle.readline()
while line:
line = line.strip()
if not line:
line = file_handle.readline()
continue
(key, value) = line.split("\t")
fields = json.loads(value)
results = expander.reduce(pair=Pair(key, fields))
for result in results:
emit(result)
line = file_handle.readline()
results = expander.finalize()
for result in results:
emit(result)
