def ring_in_order(center: h3.H3Index, k: int) -> t.Iterable[h3.H3Index]:
"""Return a hexagonal approximation of a circle.
Give the elements of the k-ring around center in clockwise or anticlockwise
order.
"""
points: t.Set[h3.H3Index] = h3.k_ring_distances(center, k)[k]
start = points.pop()
n = start
yield start
while points:
n = (h3.k_ring_distances(n, 1)[1] & points).pop()
points.remove(n)
yield n
def users_in_hex_plus_neighbors_list(db, hexid, contiguity=1, resolution='9'):
"""Adding neigbors of specified contiguity using h3 ring functions
# comment> Shouldnt be necessary to specify resolution once hexid is given> check h3 documentation to obtain resoltuion on the basis of hexid
"""
neighboring_hex_list = list(h3.k_ring_distances(hexid, ring_size=contiguity)[contiguity])
# funcion para graficar los poligonos
# gdf=hexlist_to_geodataframe(neighboring_hex_list)
# gdf.plot()
users_in_hex_plus_neighbors_list = []
users_in_hex_list2 = users_in_hex_list(db, hexid, resolution=resolution)
users_in_hex_plus_neighbors_list.extend(users_in_hex_list2) # adding first those living in hex
hexfieldname_indb = 'hex' + resolution + "." + 'hex' + resolution
for n_hexid in neighboring_hex_list:
users_in_n_hex_cursor = db.users.find({hexfieldname_indb: n_hexid})
users_in_n_hex_df = pd.DataFrame(list(users_in_n_hex_cursor))
try:
users_in_n_hex_list = list(users_in_n_hex_df['u_id'])
except KeyError:
pass
else:
users_in_hex_plus_neighbors_list.extend(users_in_n_hex_list)
return users_in_hex_plus_neighbors_list
def create_city_hexagons(lat=49.83826, lon=24.02324):
"""
For Lviv, coordinates: 49.83826, 24.02324.
Function, for deviding city into regions, and save coordinates for this boundaries to DF.
Coordinates must be a city center from OpenStreetMap
Takes:
lat: float value of latitude
lon: float value of longitude
Return:
df with coordinates
"""
h3_address = h3.geo_to_h3(lat, lon, 8)
hexagons = h3.k_ring_distances(h3_address, 6)
list_address = [hex for el in hexagons for hex in el]
latitudes1, latitudes2, latitudes3, latitudes4, latitudes5, latitudes6 = \
list(), list(), list(), list(), list(), list()
longitudes1, longitudes2, longitudes3, longitudes4, longitudes5, longitudes6 = \
list(), list(), list(), list(), list(), list()
hexagon_id = list()
for index, element in enumerate(list_address):
hex_boundary = h3.h3_to_geo_boundary(element)
hexagon_id.append(index + 1)
latitudes1.append(hex_boundary[0][0])
longitudes1.append(hex_boundary[0][1])
latitudes2.append(hex_boundary[1][0])
longitudes2.append(hex_boundary[1][1])
latitudes3.append(hex_boundary[2][0])
longitudes3.append(hex_boundary[2][1])
latitudes4.append(hex_boundary[3][0])
longitudes4.append(hex_boundary[3][1])
latitudes5.append(hex_boundary[4][0])
longitudes5.append(hex_boundary[4][1])
latitudes6.append(hex_boundary[5][0])
longitudes6.append(hex_boundary[5][1])
df_address = pd.DataFrame({
"hexagon_id": hexagon_id,
"latitude1": latitudes1,
"latitude2": latitudes2,
"latitude3": latitudes3,
"latitude4": latitudes4,
"latitude5": latitudes5,
"latitude6": latitudes6,
"longitude1": longitudes1,
"longitude2": longitudes2,
"longitude3": longitudes3,
"longitude4": longitudes4,
"longitude5": longitudes5,
"longitude6": longitudes6
})
return df_address
def test_k_ring_distances(self):
hexagons = h3.k_ring_distances('8928308280fffff', 1)
self.assertEqual(2, len(hexagons))
self.assertEqual(1, len(hexagons[0]))
self.assertEqual(6, len(hexagons[1]))
self.assertTrue('8928308280fffff' in hexagons[0])
self.assertTrue('8928308280bffff' in hexagons[1])
self.assertTrue('89283082807ffff' in hexagons[1])
self.assertTrue('89283082877ffff' in hexagons[1])
self.assertTrue('89283082803ffff' in hexagons[1])
self.assertTrue('89283082873ffff' in hexagons[1])
self.assertTrue('8928308283bffff' in hexagons[1])
hexagons = h3.k_ring_distances('870800003ffffff', 2)
self.assertEqual(3, len(hexagons))
self.assertEqual(1, len(hexagons[0]))
self.assertEqual(6, len(hexagons[1]))
self.assertEqual(11, len(hexagons[2]))
def run_on_one_tile(
lon: float, lat: float,
db: sqlalchemy.engine.Engine,
hex: sqlalchemy.Table, t_dist: sqlalchemy.Table
) -> t.Set[ArrayIndex]:
"""Compute pairwise distances and ecoregion composition
Given a digital elevation model as raster map and a matching ecoregions
raster map, compute the pairwise distance to its 1-hex and 2-hex neighbors
for every H3 address hex at standard resolution, as well as the approximate
cover of that cell in terms of ecoregions, for all cells where that is
possible.
Distances are computed in gross hours of travel while navigating off-track,
following [@irmischer2018measuring].
Returns
=======
d: A mapping. d[h1][h2] is the distance, in hours, from the center of h1 to
the center of h2.
e: A mapping. d[h1][b] is the proportion of hex h1 covered by ecoregion b.
"""
elevation_file = gmted_tile_from_geocoordinates(lon, lat)
m_trafo = elevation_file.transform
height, width = elevation_file.shape
elevation = numpy.full((height + 1000, width + 1000), -100, int)
ecoregions = numpy.full((height + 1000, width + 1000), 999, int)
elevation[500:-500, 500:-500] = elevation_file.read(1)
ecoregions[500:-500, 500:-500] = ecoregion_tile_from_geocoordinates(lon, lat).read(1)
print("Loading adjacent data…")
try:
elevation[:500, :500] = (gmted_tile_from_geocoordinates(lon - 30, lat + 20)).read(1)[-500:, -500:]
ecoregions[:500, :500] = ecoregion_tile_from_geocoordinates(lon - 30, lat + 20).read(1)[-500:, -500:]
except rasterio.RasterioIOError:
pass
try:
elevation[:500, 500:-500] = (gmted_tile_from_geocoordinates(lon, lat + 20)).read(1)[-500:, :]
ecoregions[:500, 500:-500] = ecoregion_tile_from_geocoordinates(lon, lat + 20).read(1)[-500:, :]
except rasterio.RasterioIOError:
pass
try:
elevation[:500, -500:] = (gmted_tile_from_geocoordinates(lon + 30, lat + 20)).read(1)[-500:, :500]
ecoregions[:500, -500:] = ecoregion_tile_from_geocoordinates(lon + 30, lat + 20).read(1)[-500:, :500]
except rasterio.RasterioIOError:
pass
try:
elevation[500:-500, :500] = (gmted_tile_from_geocoordinates(lon - 30, lat)).read(1)[:, -500:]
ecoregions[500:-500, :500] = ecoregion_tile_from_geocoordinates(lon - 30, lat).read(1)[:, -500:]
except rasterio.RasterioIOError:
pass
try:
elevation[500:-500, -500:] = (gmted_tile_from_geocoordinates(lon + 30, lat)).read(1)[:, :500]
ecoregions[500:-500, -500:] = ecoregion_tile_from_geocoordinates(lon + 30, lat).read(1)[:, :500]
except rasterio.RasterioIOError:
pass
try:
elevation[-500:, :500] = (gmted_tile_from_geocoordinates(lon - 30, lat - 20)).read(1)[:500, -500:]
ecoregions[-500:, :500] = ecoregion_tile_from_geocoordinates(lon - 30, lat - 20).read(1)[:500, -500:]
except rasterio.RasterioIOError:
pass
try:
elevation[-500:, 500:-500] = (gmted_tile_from_geocoordinates(lon, lat - 20)).read(1)[:500, :]
ecoregions[-500:, 500:-500] = ecoregion_tile_from_geocoordinates(lon, lat - 20).read(1)[:500, :]
except rasterio.RasterioIOError:
pass
try:
elevation[-500:, -500:] = (gmted_tile_from_geocoordinates(lon + 30, lat - 20)).read(1)[:500, :500]
ecoregions[-500:, -500:] = ecoregion_tile_from_geocoordinates(lon + 30, lat - 20).read(1)[:500, :500]
except rasterio.RasterioIOError:
pass
print("Computing hex extents…")
transform = rasterio.Affine(m_trafo.a, 0, m_trafo.c - 500 * m_trafo.a,
0, m_trafo.e, m_trafo.f - 500 * m_trafo.e)
def rowcol(latlon):
lat, lon = latlon
if lon > 170:
# FIXME: We can and need to do this because we are working on the
# Americas and the Americas only. The generic solution is more
# difficult.
lon = lon - 360
col, row = ~transform * (lon, lat)
return int(row), int(col)
center: t.Dict[h3.H3Index, t.Tuple[int, int]] = {}
cs = sqlalchemy.select([hex.c.hexbin, hex.c.vlongitude, hex.c.vlatitude]).where(hex.c.vlongitude != None)
for h, lon, lat in db.execute(cs).fetchall():
row, col = rowcol((lat, lon))
if 500 <= col < width + 500 and 500 < row < height + 500:
center[h] = (row, col)
print("Computing terrain coefficients…")
terrain_coefficient_raster = TC[ecoregions]
print("Computing distances on the grid…")
distance_by_direction = all_pairwise_distances(
elevation, transform, terrain_coefficient_raster)
failed: t.Set[ArrayIndex] = set()
finished: t.Set[ArrayIndex] = set()
for start, (row, col) in center.items():
print(f"Computing area around {start:}…")
lon, lat = transform * (col, row)
hexbin = h3.geo_to_h3(lat, lon, RESOLUTION)
this, neighbors1, neighbors2, neighbors3 = list(h3.k_ring_distances(hexbin, 3))
neighbors: t.Set[h3.H3Index] = neighbors1 | neighbors2
distance_known = sqlalchemy.select([t_dist.c.hexbin2]).where(
(t_dist.c.hexbin1 == start) & (t_dist.c.source == 0))
missing = (neighbors - {k[0] for k in db.execute(distance_known).fetchall()}) & set(center)
if not missing:
print("Already known.")
finished.add(start)
continue
print("Not found:", missing)
if start in failed or start in finished:
continue
points = []
for n in neighbors2 | neighbors3:
try:
points.append(center[n])
except KeyError:
points.append(rowcol(h3.h3_to_geo(n)))
rmin = min(p[0] for p in points)
rmax = max(p[0] for p in points)
cmin = min(p[1] for p in points)
cmax = max(p[1] for p in points)
assert rmin >= 0
assert cmin >= 0
def rel_rowcol(latlon):
lat, lon = latlon
if lon > 170:
lon = lon - 360
col, row = ~transform * (lon, lat)
return int(row) - rmin, int(col) - cmin
destinations = [(center[n][0] - rmin, center[n][1] - cmin)
for n in neighbors
if n in center]
print(f"Looking for {neighbors:}…")
distances = distances_from_focus(
(center[start][0] - rmin, center[start][1] - cmin),
set(destinations),
{(n, e): d[rmin-min(n, 0):rmax + 1 - max(0, n),
cmin-min(e, 0):cmax + 1 - max(0, e)]
for (n, e), d in distance_by_direction.items()},
pred=None
)
# For debugging: Output the results
distances_by_center = {}
for t, d in center.items():
try:
dist = distances[d[0] - rmin, d[1] - cmin]
if numpy.isfinite(dist):
distances_by_center[t] = dist
except IndexError:
continue
print(distances_by_center)
with db.begin() as conn:
for n, d in distances_by_center.items():
try:
conn.execute(t_dist.insert({
"hexbin1": start,
"hexbin2": n,
"distance": d,
"source": 0}).prefix_with('OR IGNORE'))
except sqlalchemy.exc.IntegrityError:
pass
finished.add(start)
return failed
def k_ring_distances(self, hex_id: str, ring_size: int) -> set:
"""return indices for all hexagons within the range of `ring_size` hexagon from hex_id, hexagons are grouped by the distance.
"""
return h3.k_ring_distances(hex_id, ring_size)
def neighbors(hex: h3.H3Index) -> t.Set[h3.H3Index]:
this, neighbors = h3.k_ring_distances(hex, 1)
return neighbors