outf = '/data/intradb/home/hileman/intradb_python_pipeline/log/%s_%s_%s.csv' % (idb.project, pipeline, timestamp)
print outf
if __name__ == "__main__":
sessions = idb.getSessions(idb.project)
session_labels = list()
for s in sessions:
#if 'Stroop' not in s.get('label'):
# continue
session_labels.append(s.get('label'))
session_labels = sorted(session_labels, key=lambda s: s.split('_')[0])
for s in session_labels:
idb.session_label = s
sub = idb.getSessionSubject()
# fails sometimes, so check that this found something
#if not sub:
# sub = s.split('_')[0]
print sub
command = "python resources.py -u %s -p %s -H %s -s %s -S %s -P %s -f %s -i %s -I" % \
(idb.username, idb.password, idb.url, sub, s, idb.project, outf, pipeline)
print command
p = envoy.run(command)
if p.std_err:
print p.std_err
print "Here's your output:", outf
if not opts.username:
parser.print_help()
sys.exit(-1)
if opts.csv:
try:
csv_file = open(opts.csv, 'a')
except:
print "Problem with file " + opts.csv
exit(-1)
else:
print "No CSV option"
idb = HcpInterface(opts.hostname, opts.username, opts.password, opts.project)
idb.subject_label = opts.subject
idb.session_label = opts.session
deface_types = ('Bias_Transmit', 'Bias_Receive', 'T1w', 'T2w', 'T1w_MEG', 'T2w_MEG')
deface_seriesdescs = ('BIAS_BC', 'BIAS_32CH', 'AFI', 'T1w_MPR1', 'T2w_SPC1', 'T1w_MPR2', 'T2w_SPC2')
def verifyValidation():
"""
Checks for ProtocolVal at the experiment level.
"""
print "--Verifying Validation"
uri = '/REST/experiments?xsiType=val:protocolData&project=%s&session_label=%s' % \
(idb.project, idb.session_label)
validation = idb.getJson(uri)
if validation:
