def main():
parser = argparse.ArgumentParser(
usage='%(prog)s [-h] <json_file> <h5_file>')
parser.add_argument('in_filename',
nargs='+',
help='JSon file to be converted to h5')
parser.add_argument('out_filename',
nargs='+',
help='name of HDF5 output file')
args = parser.parse_args()
# create logger
log = logging.getLogger("h5serv")
# log.setLevel(logging.WARN)
log.setLevel(logging.INFO)
# add log handler
handler = logging.FileHandler('./jsontoh5.log')
# add handler to logger
log.addHandler(handler)
text = open(args.in_filename[0]).read()
# parse the json file
h5json = json.loads(text)
if "root" not in h5json:
raise Exception("no root key in input file")
root_uuid = h5json["root"]
filename = args.out_filename[0]
# create the file, will raise IOError if there's a problem
Hdf5db.createHDF5File(filename)
with Hdf5db(filename,
root_uuid=root_uuid,
update_timestamps=False,
app_logger=log) as db:
h5writer = Writeh5(db, h5json)
h5writer.writeFile()
# open with h5py and remove the _db_ group
# Note: this will delete any anonymous (un-linked) objects
f = h5py.File(filename, 'a')
if "__db__" in f:
del f["__db__"]
f.close()
print("done!")
def main():
parser = argparse.ArgumentParser(usage='%(prog)s [-h] <json_file> <h5_file>')
parser.add_argument('in_filename', nargs='+', help='JSon file to be converted to h5')
parser.add_argument('out_filename', nargs='+', help='name of HDF5 output file')
args = parser.parse_args()
# create logger
log = logging.getLogger("h5serv")
# log.setLevel(logging.WARN)
log.setLevel(logging.INFO)
# add log handler
handler = logging.FileHandler('./jsontoh5.log')
# add handler to logger
log.addHandler(handler)
text = open(args.in_filename[0]).read()
# parse the json file
h5json = json.loads(text)
if "root" not in h5json:
raise Exception("no root key in input file")
root_uuid = h5json["root"]
filename = args.out_filename[0]
# create the file, will raise IOError if there's a problem
Hdf5db.createHDF5File(filename)
with Hdf5db(filename, root_uuid=root_uuid, update_timestamps=False, app_logger=log) as db:
h5writer = Writeh5(db, h5json)
h5writer.writeFile()
# open with h5py and remove the _db_ group
# Note: this will delete any anonymous (un-linked) objects
f = h5py.File(filename, 'a')
if "__db__" in f:
del f["__db__"]
f.close()
print("done!")
def main():
nargs = len(sys.argv)
dumper = Dumph5()
dumper.verbose = False
dumper.endpoint = None
dumper.port = 7253
dumper.noDsetData = False
dumper.noAttrData = False
endpoint_option = "-endpoint="
port_option = "-port="
option_count = 0
for arg in sys.argv:
if arg.startswith(endpoint_option):
endpoint = arg[len(endpoint_option):]
if endpoint.startswith("http"):
dumper.endpoint = endpoint
else:
dumper.endpoint = "http://" + endpoint
option_count += 1
elif arg.startswith(port_option):
port = arg[len(port_option):]
dumper.port = int(port)
option_count += 1
elif arg == "-v":
dumper.verbose = True
if nargs - option_count <= 2:
printUsage()
domain = sys.argv[nargs-2]
filename = sys.argv[nargs-1]
print "domain:", domain
print "filename:", filename
dumper.domain = domain
domain_json = dumper.makeRequest("/")
if "root" not in domain_json:
raise Exception("no root key in domain response")
root_uuid = domain_json["root"]
# create the file, will raise IOError if there's a problem
Hdf5db.createHDF5File(filename)
with Hdf5db(filename, root_uuid=root_uuid) as db:
dumper.writeFile(db)
# open with h5py and remove the _db_ group
# Note: this will delete any anonymous (un-linked) objects
f = h5py.File(filename, 'a')
del f["__db__"]
f.close()
print "done!"
def main():
nargs = len(sys.argv)
dumper = Dumph5()
dumper.verbose = False
dumper.endpoint = None
dumper.port = 7253
dumper.noDsetData = False
dumper.noAttrData = False
endpoint_option = "-endpoint="
port_option = "-port="
option_count = 0
for arg in sys.argv:
if arg.startswith(endpoint_option):
endpoint = arg[len(endpoint_option):]
if endpoint.startswith("http"):
dumper.endpoint = endpoint
else:
dumper.endpoint = "http://" + endpoint
option_count += 1
elif arg.startswith(port_option):
port = arg[len(port_option):]
dumper.port = int(port)
option_count += 1
elif arg == "-v":
dumper.verbose = True
if nargs - option_count <= 2:
printUsage()
domain = sys.argv[nargs - 2]
filename = sys.argv[nargs - 1]
print "domain:", domain
print "filename:", filename
dumper.domain = domain
domain_json = dumper.makeRequest("/")
if "root" not in domain_json:
raise Exception("no root key in domain response")
root_uuid = domain_json["root"]
# create the file, will raise IOError if there's a problem
Hdf5db.createHDF5File(filename)
with Hdf5db(filename, root_uuid=root_uuid) as db:
dumper.writeFile(db)
# open with h5py and remove the _db_ group
# Note: this will delete any anonymous (un-linked) objects
f = h5py.File(filename, 'a')
del f["__db__"]
f.close()
print "done!"