def extract(self, experiment, type, indiv):
filepath = GetAltFile.getAltTraceFile(experiment, type, indiv)
if filepath != False:
return TraceDistance.calcDistance(filepath)
else:
print "WARN: couldn't find alt trace file for experiment {}, indiv {}".format(experiment[0], indiv[0])
return ["NA"] * 4
def extract(self, experiment, type, indiv):
noResultVal = ["NA", "NA", "NA"]
filepath = GetAltFile.getAltPopFile(experiment, type, indiv)
if filepath != False:
vd = VoxelData(filepath)
relCounts = vd.getRelCounts()
if not relCounts:
return noResultVal
return [relCounts["fat"], relCounts["muscle"], relCounts["bone"]]
else:
return noResultVal
def extract(self, experiment, type, indiv):
noResultVal = ['NA'] * 4
filepath = GetAltFile.getAltPopFile(experiment, type, indiv)
if filepath != False:
vd = VoxelData(filepath)
absCounts = vd.getAbsCounts()
if not absCounts:
return noResultVal
return [absCounts["fat"], absCounts["muscle"], absCounts["bone"], sum(absCounts.values())]
else:
return noResultVal
