def hodsubsample(self,marray,flist=[0.682689492137,0.954499736104],nsubsample=1000,
whichbox=1,cenopt=2,satopt=2,bosswdir='/home/howdiedoo/boss/',whichPB=0,COMVopt=0):
"""
Subsamples the chain and computes a bands containing flist fractions.
nsubsample = 1000 by default.
marray are mass points where you want to evaluate the hod.
"""
#def wgtresult2(wgt,v,flist=[0.682689492137,0.954499736104]):
sNcen = np.zeros([len(marray),nsubsample])
sNsat = np.zeros([len(marray),nsubsample])
sNtot = np.zeros([len(marray),nsubsample])
sMmed = np.zeros([3,nsubsample])
sMavg = np.zeros([3,nsubsample])
for nn in range(nsubsample):
hh = hod.hodfromchain(self.randomsubsample(),whichbox=whichbox,cenopt=cenopt,satopt=satopt,\
bosswdir=bosswdir,whichPB=whichPB,COMVopt=COMVopt)
sNcen[:,nn] = hh.Ncen(marray)
sNsat[:,nn] = hh.Ncen(marray) * hh.Nsat(marray)
sNtot[:,nn] = sNcen[:,nn] + sNsat[:,nn]
## compute interesting stats on halo masses.
ctmp = (hh.mf.Nofm*hh.Ncen(hh.mf.m)).cumsum()
sMmed[0,nn] = hh.mf.m[np.where(ctmp >= 0.5*ctmp[-1])[0].min()]
sMavg[0,nn] = (hh.mf.m*hh.mf.Nofm*hh.Ncen(hh.mf.m)).sum()/ctmp[-1]
ctmp = (hh.mf.Nofm*hh.Ncen(hh.mf.m)*(1.+hh.Nsat(hh.mf.m))).cumsum()
sMmed[2,nn] = hh.mf.m[np.where(ctmp >= 0.5*ctmp[-1])[0].min()]
sMavg[2,nn] = (hh.mf.m*hh.mf.Nofm*hh.Ncen(hh.mf.m)*(1.+hh.Nsat(hh.mf.m))).sum()/ctmp[-1]
ctmp = (hh.mf.Nofm*hh.Ncen(hh.mf.m)*(hh.Nsat(hh.mf.m))).cumsum()
sMmed[1,nn] = hh.mf.m[np.where(ctmp >= 0.5*ctmp[-1])[0].min()]
sMavg[1,nn] = (hh.mf.m*hh.mf.Nofm*hh.Ncen(hh.mf.m)*(hh.Nsat(hh.mf.m))).sum()/ctmp[-1]
rr = np.zeros([len(flist)*2+1, len(marray)])
wgttmp = np.zeros(nsubsample)+1.
bNcen = np.zeros([5,len(marray)])
bNsat = np.zeros([5,len(marray)])
bNtot = np.zeros([5,len(marray)])
Mmed = np.zeros([5,3])
Mavg = np.zeros([5,3])
for ii in range(3):
Mmed[:,ii] = wgtresult2raw(wgttmp,sMmed[ii,:])
Mavg[:,ii] = wgtresult2raw(wgttmp,sMavg[ii,:])
for mm in range(len(marray)):
# print bNcen[:,mm].shape
# print wgtresult2raw(wgttmp,sNcen[mm,:])
# print wgtresult2raw(wgttmp,sNcen[mm,:]).shape
bNcen[:,mm] = wgtresult2raw(wgttmp,sNcen[mm,:])
bNsat[:,mm] = wgtresult2raw(wgttmp,sNsat[mm,:])
bNtot[:,mm] = wgtresult2raw(wgttmp,sNtot[mm,:])
self.bNcen = bNcen
self.bNsat = bNsat
self.bNtot = bNtot
self.msub = marray
self.Mmed = Mmed
self.Mavg = Mavg
self.nsubsample = nsubsample
def fillsig2hod(self,
whichbox=1,
cenopt=2,
satopt=2,
bosswdir='/home/howdiedoo/boss/',
whichPB=0,
COMVopt=0,
cenvfrac=0.3,
ihvscale=1.0,
cenvfromchain=1,
ihvfromchain=1):
"""
Default behavior is to take values for cenvfrac and ihv from the chain, but add cenvfrac from the parameter in quadruture.
"""
sig2hod = np.zeros(self.nelts)
mycenvfrac = cenvfrac
myihv = ihvscale
for cnt, elt in zip(range(self.nelts), self.chain):
hh = hod.hodfromchain(elt,
whichbox=whichbox,
cenopt=cenopt,
satopt=satopt,
bosswdir=bosswdir,
whichPB=whichPB,
COMVopt=COMVopt)
if cenvfromchain == 1:
mycenvfrac = (elt['cenvfrac']**2 + cenvfrac**2)
if mycenvfrac > 0.:
mycenvfrac = mycenvfrac**0.5
if ihvfromchain == 1:
myihv = elt['ihvscale']
sig2hod[cnt] = hh.sig2hod(cenvfrac=mycenvfrac, ihvscale=myihv)
#if cnt%100 == 0:
# print 'done',cnt,'of ',self.nelts
self.sig2hod = sig2hod
self.cenvfrac = cenvfrac
self.ihvscale = ihvscale
self.cenvfromchain = cenvfromchain
self.ihvfromchain = ihvfromchain
def fillsig2hod(self,whichbox=1,cenopt=2,satopt=2,bosswdir='/home/howdiedoo/boss/',whichPB=0,COMVopt=0,cenvfrac=0.3,ihvscale=1.0,cenvfromchain=1,ihvfromchain=1):
"""
Default behavior is to take values for cenvfrac and ihv from the chain, but add cenvfrac from the parameter in quadruture.
"""
sig2hod = np.zeros(self.nelts)
mycenvfrac = cenvfrac
myihv = ihvscale
for cnt, elt in zip(range(self.nelts), self.chain):
hh = hod.hodfromchain(elt,whichbox=whichbox,cenopt=cenopt,satopt=satopt,bosswdir=bosswdir,whichPB=whichPB,COMVopt=COMVopt)
if cenvfromchain == 1:
mycenvfrac = (elt['cenvfrac']**2 + cenvfrac**2)
if mycenvfrac > 0.:
mycenvfrac = mycenvfrac**0.5
if ihvfromchain == 1:
myihv = elt['ihvscale']
sig2hod[cnt] = hh.sig2hod(cenvfrac=mycenvfrac,ihvscale=myihv)
#if cnt%100 == 0:
# print 'done',cnt,'of ',self.nelts
self.sig2hod = sig2hod
self.cenvfrac = cenvfrac
self.ihvscale = ihvscale
self.cenvfromchain = cenvfromchain
self.ihvfromchain = ihvfromchain
def plothodsubsample(self,
ax=None,
popt=0,
rebinsize=10,
fillopt=0,
color='k',
renormalize=False,
MFwgt=False,
flist=[0.954499736104],
nsubsample=1000,
whichbox=1,
cenopt=2,
satopt=2,
bosswdir='/home/howdiedoo/boss/',
whichPB=0,
COMVopt=0,
alpha=0.5,
fsatrescale=1.):
"""
Computes if necessary the subsample.
popt = 0: Ncen
popt = 1: Nsat
popt = 2: Ntot
popt = 3: Nsat/fsatrescale; only makes sense on a MFwgt plot.
"""
try:
x = self.bNcen[0, 0]
x = self.bNcen[0, 0]
x = self.bNcen[0, 0]
wgt = np.zeros(len(self.msub)) + 1.
if MFwgt == True:
hh = hod.hodfromchain(self.chain[0],
whichbox=whichbox,
cenopt=cenopt,
satopt=satopt,
bosswdir=bosswdir,
whichPB=whichPB,
COMVopt=COMVopt)
wgt = hh.mf.Nofm
if rebinsize > 1:
Nrebin = BRutils.rebin(hh.mf.Nofm, rebinsize=rebinsize)
wgt = Nrebin
except:
## need to run subsample.
hh = hod.hodfromchain(self.chain[0],
whichbox=whichbox,
cenopt=cenopt,
satopt=satopt,
bosswdir=bosswdir,
whichPB=whichPB,
COMVopt=COMVopt)
Mlist = hh.mf.m
wgt = np.zeros(len(Mlist)) + 1.
if MFwgt == True:
wgt = hh.mf.Nofm
if rebinsize > 1:
Mlist = np.exp(
BRutils.rebin(np.log(hh.mf.m), rebinsize=rebinsize))
wgt = np.zeros(len(Mlist)) + 1.
tmpo = np.log10(Mlist[1:] / Mlist[:-1]).mean()
assert (
np.fabs(np.log10(Mlist[1:]) - np.log10(Mlist[:-1]) - tmpo)
< 0.001 * tmpo).all()
if MFwgt == True:
Nrebin = BRutils.rebin(hh.mf.Nofm, rebinsize=rebinsize)
wgt = Nrebin
self.hodsubsample(Mlist,
flist=flist,
nsubsample=nsubsample,
whichbox=whichbox,
cenopt=cenopt,
satopt=satopt,
bosswdir=bosswdir,
whichPB=whichPB,
COMVopt=COMVopt)
if ax is None:
ff = plt.figure(figsize=[6, 6])
ax = ff.add_subplot(1, 1, 1)
else:
ff = None
if popt == 0:
myy1 = wgt * self.bNcen[1]
myy2 = wgt * self.bNcen[2]
if popt == 1:
myy1 = wgt * self.bNsat[1]
myy2 = wgt * self.bNsat[2]
if popt == 2:
myy1 = wgt * self.bNtot[1]
myy2 = wgt * self.bNtot[2]
if popt == 3:
myy1 = wgt * self.bNsat[1] / fsatrescale
myy2 = wgt * self.bNsat[2] / fsatrescale
if renormalize == True:
myy1 = myy1 / float(myy1.sum())
myy2 = myy2 / float(myy2.sum())
if fillopt == 1:
ax.fill_between(self.msub,
myy1,
myy2,
facecolor=color,
alpha=alpha)
else:
ax.plot(self.msub, myy1, color)
ax.plot(self.msub, myy2, color)
## how do we fill between two curves instead.
ax.set_xscale('log')
return ff, ax
def hodsubsample(self,
marray,
flist=[0.682689492137, 0.954499736104],
nsubsample=1000,
whichbox=1,
cenopt=2,
satopt=2,
bosswdir='/home/howdiedoo/boss/',
whichPB=0,
COMVopt=0):
"""
Subsamples the chain and computes a bands containing flist fractions.
nsubsample = 1000 by default.
marray are mass points where you want to evaluate the hod.
"""
#def wgtresult2(wgt,v,flist=[0.682689492137,0.954499736104]):
sNcen = np.zeros([len(marray), nsubsample])
sNsat = np.zeros([len(marray), nsubsample])
sNtot = np.zeros([len(marray), nsubsample])
sMmed = np.zeros([3, nsubsample])
sMavg = np.zeros([3, nsubsample])
for nn in range(nsubsample):
hh = hod.hodfromchain(self.randomsubsample(),whichbox=whichbox,cenopt=cenopt,satopt=satopt,\
bosswdir=bosswdir,whichPB=whichPB,COMVopt=COMVopt)
sNcen[:, nn] = hh.Ncen(marray)
sNsat[:, nn] = hh.Ncen(marray) * hh.Nsat(marray)
sNtot[:, nn] = sNcen[:, nn] + sNsat[:, nn]
## compute interesting stats on halo masses.
ctmp = (hh.mf.Nofm * hh.Ncen(hh.mf.m)).cumsum()
sMmed[0, nn] = hh.mf.m[np.where(ctmp >= 0.5 * ctmp[-1])[0].min()]
sMavg[0, nn] = (hh.mf.m * hh.mf.Nofm *
hh.Ncen(hh.mf.m)).sum() / ctmp[-1]
ctmp = (hh.mf.Nofm * hh.Ncen(hh.mf.m) *
(1. + hh.Nsat(hh.mf.m))).cumsum()
sMmed[2, nn] = hh.mf.m[np.where(ctmp >= 0.5 * ctmp[-1])[0].min()]
sMavg[2, nn] = (hh.mf.m * hh.mf.Nofm * hh.Ncen(hh.mf.m) *
(1. + hh.Nsat(hh.mf.m))).sum() / ctmp[-1]
ctmp = (hh.mf.Nofm * hh.Ncen(hh.mf.m) *
(hh.Nsat(hh.mf.m))).cumsum()
sMmed[1, nn] = hh.mf.m[np.where(ctmp >= 0.5 * ctmp[-1])[0].min()]
sMavg[1, nn] = (hh.mf.m * hh.mf.Nofm * hh.Ncen(hh.mf.m) *
(hh.Nsat(hh.mf.m))).sum() / ctmp[-1]
rr = np.zeros([len(flist) * 2 + 1, len(marray)])
wgttmp = np.zeros(nsubsample) + 1.
bNcen = np.zeros([5, len(marray)])
bNsat = np.zeros([5, len(marray)])
bNtot = np.zeros([5, len(marray)])
Mmed = np.zeros([5, 3])
Mavg = np.zeros([5, 3])
for ii in range(3):
Mmed[:, ii] = wgtresult2raw(wgttmp, sMmed[ii, :])
Mavg[:, ii] = wgtresult2raw(wgttmp, sMavg[ii, :])
for mm in range(len(marray)):
# print bNcen[:,mm].shape
# print wgtresult2raw(wgttmp,sNcen[mm,:])
# print wgtresult2raw(wgttmp,sNcen[mm,:]).shape
bNcen[:, mm] = wgtresult2raw(wgttmp, sNcen[mm, :])
bNsat[:, mm] = wgtresult2raw(wgttmp, sNsat[mm, :])
bNtot[:, mm] = wgtresult2raw(wgttmp, sNtot[mm, :])
self.bNcen = bNcen
self.bNsat = bNsat
self.bNtot = bNtot
self.msub = marray
self.Mmed = Mmed
self.Mavg = Mavg
self.nsubsample = nsubsample
def plothodsubsample(self,ax=None,popt=0,rebinsize=10,fillopt=0,color='k',renormalize=False,MFwgt=False,flist=[0.954499736104],nsubsample=1000,
whichbox=1,cenopt=2,satopt=2,bosswdir='/home/howdiedoo/boss/',whichPB=0,COMVopt=0,alpha=0.5,fsatrescale=1.):
"""
Computes if necessary the subsample.
popt = 0: Ncen
popt = 1: Nsat
popt = 2: Ntot
popt = 3: Nsat/fsatrescale; only makes sense on a MFwgt plot.
"""
try:
x = self.bNcen[0,0]
x = self.bNcen[0,0]
x = self.bNcen[0,0]
wgt = np.zeros(len(self.msub))+1.
if MFwgt == True:
hh = hod.hodfromchain(self.chain[0],whichbox=whichbox,cenopt=cenopt,satopt=satopt,bosswdir=bosswdir,whichPB=whichPB,COMVopt=COMVopt)
wgt = hh.mf.Nofm
if rebinsize > 1:
Nrebin = BRutils.rebin(hh.mf.Nofm,rebinsize=rebinsize)
wgt = Nrebin
except:
## need to run subsample.
hh = hod.hodfromchain(self.chain[0],whichbox=whichbox,cenopt=cenopt,satopt=satopt,bosswdir=bosswdir,whichPB=whichPB,COMVopt=COMVopt)
Mlist = hh.mf.m
wgt = np.zeros(len(Mlist))+1.
if MFwgt == True:
wgt = hh.mf.Nofm
if rebinsize > 1:
Mlist = np.exp(BRutils.rebin(np.log(hh.mf.m),rebinsize=rebinsize))
wgt = np.zeros(len(Mlist))+1.
tmpo = np.log10(Mlist[1:]/Mlist[:-1]).mean()
assert (np.fabs(np.log10(Mlist[1:]) - np.log10(Mlist[:-1]) - tmpo) < 0.001*tmpo).all()
if MFwgt == True:
Nrebin = BRutils.rebin(hh.mf.Nofm,rebinsize=rebinsize)
wgt = Nrebin
self.hodsubsample(Mlist,flist=flist,nsubsample=nsubsample,whichbox=whichbox,cenopt=cenopt,satopt=satopt,bosswdir=bosswdir,whichPB=whichPB,COMVopt=COMVopt)
if ax is None:
ff = plt.figure(figsize=[6,6])
ax = ff.add_subplot(1,1,1)
else:
ff = None
if popt == 0:
myy1 = wgt*self.bNcen[1]
myy2 = wgt*self.bNcen[2]
if popt == 1:
myy1 = wgt*self.bNsat[1]
myy2 = wgt*self.bNsat[2]
if popt == 2:
myy1 = wgt*self.bNtot[1]
myy2 = wgt*self.bNtot[2]
if popt == 3:
myy1 = wgt*self.bNsat[1]/fsatrescale
myy2 = wgt*self.bNsat[2]/fsatrescale
if renormalize == True:
myy1 = myy1/float(myy1.sum())
myy2 = myy2/float(myy2.sum())
if fillopt == 1:
ax.fill_between(self.msub,myy1,myy2,facecolor=color,alpha=alpha)
else:
ax.plot(self.msub,myy1,color)
ax.plot(self.msub,myy2,color)
## how do we fill between two curves instead.
ax.set_xscale('log')
return ff, ax