def prepare_run(segments, force=False):
"""Prepare MIP output."""
if not force:
validate(segments['family'])
fam_key = segments['config']['familyID']
mip_version = segments['family'].get('MIPVersion', 'v2.x')
outdata_dir = segments['family']['ArchivePath']
qcped_path = os.path.join(outdata_dir, fam_key, 'qc_pedigree.yaml')
customer = segments['family']['InstanceTag'][0]
case_name = "{}-{}".format(customer, fam_key)
meta_output = build_meta(case_name, segments['family'], qcped_path,
version=mip_version, strict=False)
write_meta(meta_output, outdata_dir)
def prepare_run(segments, force=False):
"""Prepare MIP output."""
if not force:
validate(segments['family'])
outdata_dir = segments['config']['outDataDir']
qcped_path = segments['family']['PedigreeFileAnalysis']['Path']
fam_key = segments['config']['familyID']
customer = segments['family']['InstanceTag'][0]
case_name = "{}-{}".format(customer, fam_key)
mip_version = segments['family'].get('MIPVersion', 'v2.x')
meta_output = build_meta(case_name, segments['family'], qcped_path,
version=mip_version, strict=False)
write_meta(meta_output, outdata_dir)