def setUp(self): sql_user="******" sql_password="******" #sql_host="mcpeepants.bio.nyu.edu" sql_host="127.0.0.1" db_name = "pdb" astral_table = "astral95_1_75" self.astl = Astral(sql_user,sql_password, sql_host, db_name=db_name, table=astral_table) self.astl.connect() self.sfam = SuperfamilyEntry(sf_id = 'a.1.1')
class SimpleAstralRunTestCase(unittest.TestCase): def setUp(self): sql_user="******" sql_password="******" #sql_host="mcpeepants.bio.nyu.edu" sql_host="127.0.0.1" db_name = "pdb" astral_table = "astral95_1_75" self.astl = Astral(sql_user,sql_password, sql_host, db_name=db_name, table=astral_table) self.astl.connect() self.sfam = SuperfamilyEntry(sf_id = 'a.1.1') def testDBConnect(self): assert self.astl.isConnected(), 'did not connect to db' def testAllNumSFs(self): self.all_superfamilies= self.astl.get_all_superfamilies() assert 1961 == len(self.all_superfamilies), 'wrong number of terms' def testSF(self): assert "a.1.1" == self.sfam.get_id(), 'wrong superfamily id'
