def __init__(self):
"""The constructor
Initializes the log
Args:
self: The object pointer
"""
self.log = logger().get_log('configuration_manager')
def __init__(self, fname=None, mode='w',
compression=None, compression_opts=0, **kwargs):
super().__init__()
self.log = logger().get_log("h5")
if not fname: fname = "d.h5"
if mode not in ['a', 'w', 'r+']:
self.log.error("Invalid mode")
return
if compression in COMPRESSION_TYPES:
self._compression = compression
self._compression_opts = compression_opts
kwargs.update(mode=mode)
self._f = h5py.File(fname, **kwargs)
def __init__(self,
filename="d.h5",
mode='w',
compression=None,
compression_opts=0,
**kwargs):
super().__init__()
self._schemas = {}
self._tables = {}
if not filename: filename = "d.h5"
self.log = logger().get_log("table_writer")
if mode not in ['a', 'w', 'r+']:
return
kwargs.update(mode=mode)
self.open(filename, compression, compression_opts, **kwargs)
def __init__(self, config_file=None):
"""Constructor
Initializes the log and sets some the initial values of the
warehouse
Args:
self: The object pointer
"""
self.log = logger().get_log("warehouse")
c = configuration_manager()
if not config_file: config_file = "conf/config.xml"
if c.load(config_file):
cfg = c.get("global")
if cfg:
if 'name' in cfg:
self.NAME = cfg['name']
if 'version' in cfg:
self.VERSION = cfg['version']
def __init__(self, fname=None, mode='r'):
self.log = logger().get_log("h5")
self._f = h5py.File(fname, mode)
def __init__(self, filename, **kwargs):
self.log = logger().get_log("table_reader")
super().__init__()
self._tables = {}
kwargs.update(mode='r')
self.open(filename, **kwargs)
def __init__(self, fname=None):
if fname:
self._f = fits.open(fname)
self.log = logger().get_log("from_fits")
self._def = warehouse().get().fits_def
import numpy as np
from astropy.io import fits
from hpy.utils.fits import from_fits
from hpy.utils.warehouse import warehouse
from hpy.utils.data_container import data_container, Field
from hpy.core.h5table import h5table_writer, h5table_reader
from hpy.core.h5 import h5_writer, h5_reader
from hpy.log import logger
from hpy.log import logger_configuration
LOG_FILE_STR = "conf/log_config.xml"
DEFAULT_GLOBAL_CONFIG = "conf/config.xml"
log = logger().get_log('hpy')
HPY_MODE_MAP = {"bfits2hdf5": 0, "h5py": 1, "pytables": 2}
HDF5_FORMAT = {"bygroups": 0, "bytables": 1}
FITS_MODE_MAP = {"astropy": 0, "protozfits": 1}
DEFAULT_MODE = "h5py"
DEFAULT_FITS_MODE = "protozfits"
DEFAULT_HDF5_FORMAT = "bytables"
def init(file_configuration=None,
log_file=LOG_FILE_STR,
global_configuration=DEFAULT_GLOBAL_CONFIG):