def pseudoreplicate(self, options, suffix="Pseudorep"):
"""
Generate pseudoreplicates for passed tag directory by splitting randomly.
Returns sets of pseudoreps such that each numbered rep is grouped together:
[(Sample1-Pseudorep1, Sample2-Pseudorep1, Sample3-Pseudorep1),
(Sample1-Pseudorep2, Sample2-Pseudorep2, Sample3-Pseudorep2)...]
"""
self.check_output_dir(options.output_dir)
idrutils = IdrUtilities()
pseudoreps = []
for tag_dir in options.tag_dirs:
print("Generating {} pseudoreplicate tag directories for {}".format(options.pseudorep_count, tag_dir))
pseudoreps.append(
idrutils.create_pseudoreps(tag_dir, options.output_dir, count=options.pseudorep_count, suffix=suffix)
)
return list(zip(*pseudoreps))
def pseudoreplicate(self, options, suffix='Pseudorep'):
'''
Generate pseudoreplicates for passed tag directory by splitting randomly.
Returns sets of pseudoreps such that each numbered rep is grouped together:
[(Sample1-Pseudorep1, Sample2-Pseudorep1, Sample3-Pseudorep1),
(Sample1-Pseudorep2, Sample2-Pseudorep2, Sample3-Pseudorep2)...]
'''
self.check_output_dir(options.output_dir)
idrutils = IdrUtilities()
pseudoreps = []
for tag_dir in options.tag_dirs:
print('Generating {} pseudoreplicate tag directories for {}'.format(
options.pseudorep_count, tag_dir))
pseudoreps.append(idrutils.create_pseudoreps(tag_dir,
options.output_dir,
count=options.pseudorep_count,
suffix=suffix))
return list(zip(*pseudoreps))
