def test_clusterplot(tmpdir):
main([
'clusterplot', '-m', '10',
datapath('clusterplot.tab.gz'),
str(tmpdir)
])
assert tmpdir.join('IGHV1-1801.png').check()
def _run(args, expected):
"""
Run IgDiscover, redirecting stdout to a temporary file.
Then compare the output with the contents of an expected file.
"""
outpath = str(tmpdir.join('output'))
print('Running:', ' '.join(args))
with open(outpath, 'w') as f:
old_stdout = sys.stdout
sys.stdout = f
main(args)
sys.stdout = old_stdout
assert files_equal(expected, outpath)
def run(args, expected):
"""
Run IgDiscover, redirecting stdout to a temporary file.
Then compare the output with the contents of an expected file.
"""
with TemporaryDirectory() as td:
outpath = os.path.join(td, 'output')
print('Running:', ' '.join(args))
with open(outpath, 'w') as f:
old_stdout = sys.stdout
sys.stdout = f
main(args)
sys.stdout = old_stdout
assert files_equal(expected, outpath)
def test_main():
with pytest.raises(SystemExit) as exc:
main(['--version'])
assert exc.value.code == 0
def test_main():
with assert_raises(SystemExit) as exc:
main(['--version'])
assert exc.exception.code == 0
