def csv(request):
import csv
path=eval(request.POST['path'])
org=request.POST['org']
maincmps,rxns,name=zip(*path)
rxns=list(rxns[:-1])
response = HttpResponse(mimetype='text/csv')
response['Content-Disposition'] = 'attachment; filename=imp.csv'
writer = csv.writer(response)
writer.writerow(['Reaction','Reactants','Products','Enzyme','Genes'])
csvmaker.csv1(writer,rxns, org)
writer.writerow(['','','','',''])
writer.writerow(['','','','',''])
writer.writerow(['Stoichiometric Matrix'])
(mat,seen)=matrix(rxns)
csvmaker.csv2(writer,rxns,mat,seen)
return response
def detail(request):
c = {}
c.update(csrf(request))
path=eval(request.POST['path'])
wt1=float(request.POST['wt1'])
wt2=float(request.POST['wt2'])
wt3=float(request.POST['wt3'])
wt4=float(request.POST['wt4'])
wt5=float(request.POST['wt5']) #Node order
wt6=float(request.POST['wt6']) #Org
org=request.POST['orgchoice']
rmlst=request.POST['rmlst'][:-1]
starter=request.POST['typein']
ender=request.POST['typeout']
try:
starter=CompoundName.objects.get(Name=starter).comp.KeggID
except:
try:
starter= CompoundName.objects.get(Name=starter + ';').comp.KeggID
except:
if not re.match('C[0-9]{5}',starter):
c.update({'message': 'Search by KeggID or check your spelling.'})
return render_to_response('igemnopath.html',c)
#regular expression, also igemnopath
try:
ender=CompoundName.objects.get(Name=ender).comp.KeggID
except:
try:
ender = CompoundName.objects.get(Name=ender + ';').comp.KeggID
except:
if not re.match('C[0-9]{5}',starter):
c.update({'message':'Search by KeggID or check your spelling'})
return render_to_response('igemnopath.html',c)
maincmps,rxns,name=zip(*path)
(mat,seen)=matrix(rxns[:-1],maincmps)
pair=zip(mat,seen)
#from ybr import optimize
#print optimize(rxns,maincmps)
#return HttpResponse(path)
aux = optimize(rxns,maincmps)
c.update({'aux':aux})
c.update({'path':path,'in':starter,'out':ender,'wt1':wt1,'wt2':wt2,'wt3':wt3,'wt4':wt4,'wt5':wt5,'wt6':wt6,'org':org,'removed':rmlst,'pair':pair})
return render_to_response('igemdetailpage.html',c)
