def initModules(self):
self.module = PropertyMgr(self)
oldModuleName = self._currentModuleName
for m in BaseModuleMgr.__subclasses__():
print "DataMgr initializing module:", m.name
self._currentModuleName = m.name
self.module[m.name] = m(self)
self._currentModuleName = oldModuleName
def initModules(self):
self.module = PropertyMgr(self)
oldModuleName = self._currentModuleName
for m in BaseModuleMgr.__subclasses__():
print "DataMgr initializing module:", m.name
self._currentModuleName = m.name
self.module[m.name] = m(self)
self._currentModuleName = oldModuleName
def __init__(self, dataMgr):
BaseModuleMgr.__init__(self, dataMgr)
self.dataMgr = dataMgr
self.featureMgr = featureMgr
self.classifier = classifiers.classifierRandomForest.ClassifierRandomForest
if self.dataMgr.module["Classification"] is None:
self.dataMgr.module["Classification"] = self
self.classificationMgr = self["classificationMgr"] = ClassificationMgr(self.dataMgr)
if self.dataMgr.module["Classification"]["labelDescriptions"] is None:
self.dataMgr.module["Classification"]["labelDescriptions"] = VolumeLabelDescriptionMgr()
for i, im in enumerate(self.dataMgr):
self.onNewImage(im)
self.labelMgr = labelMgr.LabelMgr(self.dataMgr, self.classificationMgr)
self.featureMgr = featureMgr.FeatureMgr(self.dataMgr)
self.classificationMgr.clearFeaturesAndTraining()
def __init__(self, dataMgr):
BaseModuleMgr.__init__(self, dataMgr)
self.dataMgr = dataMgr
def __init__(self, dataMgr):
BaseModuleMgr.__init__(self, dataMgr)
self.dataMgr = dataMgr
for i, im in enumerate(self.dataMgr):
self.onNewImage(im)
def __init__(self, dataMgr):
BaseModuleMgr.__init__(self, dataMgr)
self.dataMgr = dataMgr
def loadModuleCores():
print "Loading modules core functionality..."
pathext = os.path.dirname(__file__)
abspath = os.path.abspath(pathext)
for f in os.listdir(abspath):
if os.path.isdir(abspath + "/" + f):
module_name = f # Handles no-extension files, etc.
try:
module = __import__('ilastik.modules.' + module_name + '.core')
print "Loaded core part of module", module_name
except Exception, e:
traceback.print_exc(file=sys.stdout)
pass
modules = BaseModuleMgr.__subclasses__()
def loadModuleGuis():
print "Loading modules GUI functionality..."
import ilastik.gui.ribbons.ilastikTabBase
pathext = os.path.dirname(__file__)
abspath = os.path.abspath(pathext)
for f in os.listdir(abspath):
if os.path.isdir(abspath + "/" + f):
module_name = f # Handles no-extension files, etc.
try:
module = __import__('ilastik.modules.' + module_name + '.gui')
print "Loaded GUI part of module:", module_name
except Exception, e:
def loadModuleCores():
print "Loading modules core functionality..."
pathext = os.path.dirname(__file__)
abspath = os.path.abspath(pathext)
for f in os.listdir(abspath):
if os.path.isdir(abspath + "/" + f):
module_name = f # Handles no-extension files, etc.
try:
module = __import__('ilastik.modules.' + module_name + '.core')
print "Loaded core part of module" , module_name
except Exception, e:
traceback.print_exc(file=sys.stdout)
pass
modules = BaseModuleMgr.__subclasses__()
def loadModuleGuis():
print "Loading modules GUI functionality..."
import ilastik.gui.ribbons.ilastikTabBase
pathext = os.path.dirname(__file__)
abspath = os.path.abspath(pathext)
for f in os.listdir(abspath):
if os.path.isdir(abspath + "/" + f):
module_name = f # Handles no-extension files, etc.
try:
module = __import__('ilastik.modules.' + module_name + '.gui')
print "Loaded GUI part of module:" , module_name
def __init__(self, dataMgr):
BaseModuleMgr.__init__(self, dataMgr)
self.dataMgr = dataMgr
self.unsupervisedMethod = algorithms.unsupervisedDecompositionPCA.UnsupervisedDecompositionPCA
if self.dataMgr.module["Unsupervised_Decomposition"] is None:
self.dataMgr.module["Unsupervised_Decomposition"] = self
def __init__(self, dataMgr):
BaseModuleMgr.__init__(self, dataMgr)
self.dataMgr = dataMgr
for i, im in enumerate(self.dataMgr):
self.onNewImage(im)
