def test_01_06_get_temp_current_image(self):
file_name = os.path.join(example_images_directory(),
"ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
W.set_temp_current_image(ip)
ip_other = W.get_temp_current_image()
self.assertEqual(ip.getID(), ip_other.getID())
def test_01_08_get_current_image(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
W.set_current_image(ip)
ip_out = W.get_current_image()
self.assertEqual(ip.getID(), ip_out.getID())
def test_01_08_get_current_image(self):
file_name = os.path.join(self.root_dir,
"ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
W.set_current_image(ip)
ip_out = W.get_current_image()
self.assertEqual(ip.getID(), ip_out.getID())
def test_01_06_get_temp_current_image(self):
file_name = os.path.join(example_images_directory(),
"ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
W.set_temp_current_image(ip)
ip_other = W.get_temp_current_image()
self.assertEqual(ip.getID(), ip_other.getID())
def test_01_02_get_id_list(self):
file_name = os.path.join(self.root_dir,
"ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
W.set_current_image(ip)
id_list = W.get_id_list()
self.assertTrue(ip.getID() in id_list)
def test_01_03_get_image_by_id(self):
file_name = os.path.join(self.root_dir,
"ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
ip.show()
ip_other = W.get_image_by_id(ip.getID())
self.assertEqual(ip_other.getID(), ip.getID())
def test_01_02_get_id_list(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
W.set_current_image(ip)
id_list = W.get_id_list()
self.assertTrue(ip.getID() in id_list)
def test_01_03_get_image_by_id(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
ip.show()
ip_other = W.get_image_by_id(ip.getID())
self.assertEqual(ip_other.getID(), ip.getID())
def test_02_01_show_get_and_hide(self):
file_name = os.path.join(sbs_dir, "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
ip.show()
window = ip.getWindow()
self.assertTrue(J.to_string(window).startswith("Channel1-01-A-01.tif"))
ip.hide()
def test_01_04_get_image_by_name(self):
ip = I.load_imageplus(self.file_name)
title = W.make_unique_name("Whatever")
ip.setTitle(title)
self.assertEqual(ip.getTitle(), title)
ip.show()
ip_other = W.get_image_by_name(title)
self.assertEqual(ip_other.getID(), ip.getID())
def test_01_03_lock_and_unlock(self):
file_name = os.path.join(sbs_dir, "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertTrue(ip.lockSilently())
try:
self.assertFalse(ip.lockSilently())
finally:
ip.unlock()
def test_01_04_get_image_by_name(self):
ip = I.load_imageplus(self.file_name)
title = W.make_unique_name("Whatever")
ip.setTitle(title)
self.assertEqual(ip.getTitle(), title)
ip.show()
ip_other = W.get_image_by_name(title)
self.assertEqual(ip_other.getID(), ip.getID())
def test_01_12_get_dimensions(self):
file_name = os.path.join(sbs_dir, "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
width, height, nChannels, nSlices, nFrames = ip.getDimensions()
self.assertEqual(width, ip.getWidth())
self.assertEqual(height, ip.getHeight())
self.assertEqual(nChannels, ip.getNChannels())
self.assertEqual(nSlices, ip.getNSlices())
self.assertEqual(nFrames, ip.getNFrames())
def test_01_01_get_image(self):
from cellprofiler.modules.tests import maybe_download_example_image
folder = "ExampleCometAssay"
fn = "CometTails.tif"
file_name = maybe_download_example_image([folder], fn)
imageplus_obj = I.load_imageplus(file_name)
pixels = IP.get_image(imageplus_obj.getProcessor())
pass
def test_01_04_get_image_by_name(self):
file_name = os.path.join(example_images_directory(), "ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
title = W.make_unique_name("Whatever")
ip.setTitle(title)
self.assertEqual(ip.getTitle(), title)
ip.show()
ip_other = W.get_image_by_name(title)
self.assertEqual(ip_other.getID(), ip.getID())
def test_01_04_get_image_by_name(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
title = W.make_unique_name("Whatever")
ip.setTitle(title)
self.assertEqual(ip.getTitle(), title)
ip.show()
ip_other = W.get_image_by_name(title)
self.assertEqual(ip_other.getID(), ip.getID())
def test_01_12_get_dimensions(self):
file_name = os.path.join(
self.root_dir, "ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
dims = J.get_env().get_int_array_elements(ip.getDimensions())
width, height, nChannels, nSlices, nFrames = dims
self.assertEqual(width, ip.getWidth())
self.assertEqual(height, ip.getHeight())
self.assertEqual(nChannels, ip.getNChannels())
self.assertEqual(nSlices, ip.getNSlices())
self.assertEqual(nFrames, ip.getNFrames())
def test_01_12_get_dimensions(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
dims = J.get_env().get_int_array_elements(ip.getDimensions())
width, height, nChannels, nSlices, nFrames = dims
self.assertEqual(width, ip.getWidth())
self.assertEqual(height, ip.getHeight())
self.assertEqual(nChannels, ip.getNChannels())
self.assertEqual(nSlices, ip.getNSlices())
self.assertEqual(nFrames, ip.getNFrames())
def test_01_09_get_nframes(self):
file_name = os.path.join(
self.root_dir, "ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertEqual(ip.getNFrames(), 1)
def test_01_07_get_current_slice(self):
file_name = os.path.join(
self.root_dir, "ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertEqual(ip.getCurrentSlice(), 1)
def test_01_04_get_bit_depth(self):
file_name = os.path.join(
self.root_dir, "ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertEqual(ip.getBitDepth(), 8)
def test_01_01_load_imageplus(self):
file_name = os.path.join(
self.root_dir, "ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertTrue(ip.getHeight() > 0)
def test_01_05_set_temp_current_image(self):
file_name = os.path.join(self.root_dir,
"ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
W.set_temp_current_image(ip)
def test_01_07_get_current_slice(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertEqual(ip.getCurrentSlice(), 1)
def test_01_08_get_height(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
target = load_image(file_name)
self.assertEqual(ip.getHeight(), target.shape[0])
def test_01_04_get_bit_depth(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertEqual(ip.getBitDepth(), 8)
def test_01_05_get_bytes_per_pixel(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertEqual(ip.getBytesPerPixel(), 1)
def test_01_02_get_id(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
ip.getID()
def test_01_01_load_imageplus(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertTrue(J.to_string(ip.o).startswith("imp"))
def test_01_14_get_processor(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
p = ip.getProcessor()
self.assertTrue(J.to_string(p).startswith("ip"))
def test_01_06_get_channel(self):
file_name = os.path.join(sbs_dir, "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertEqual(ip.getChannel(), 1)
def test_01_09_get_nframes(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertEqual(ip.getNFrames(), 1)
def test_01_01_load_imageplus(self):
file_name = os.path.join(sbs_dir, "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertTrue(J.to_string(ip.o).startswith("imp"))
def test_01_01_set_current_image(self):
file_name = os.path.join(example_images_directory(),
"ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
W.set_current_image(ip)
def test_01_10_get_nslices(self):
file_name = os.path.join(sbs_dir, "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertEqual(ip.getNSlices(), 1)
def test_01_05_set_temp_current_image(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
W.set_temp_current_image(ip)
def test_01_08_get_height(self):
file_name = os.path.join(sbs_dir, "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertEqual(ip.getHeight(), 640)
def test_01_01_load_imageplus(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertTrue(ip.getHeight() > 0)
def test_01_14_get_processor(self):
file_name = os.path.join(
self.root_dir, "ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
p = ip.getProcessor()
self.assertTrue(J.to_string(p).startswith("ip"))
def test_01_03_get_image_by_id(self):
ip = I.load_imageplus(self.file_name)
ip.show()
ip_other = W.get_image_by_id(ip.getID())
self.assertEqual(ip_other.getID(), ip.getID())
def test_01_02_get_id(self):
file_name = os.path.join(
self.root_dir, "ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
ip.getID()
def test_01_01_set_current_image(self):
file_name = os.path.join(example_images_directory(),
"ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
W.set_current_image(ip)
def test_01_05_get_bytes_per_pixel(self):
file_name = os.path.join(
self.root_dir, "ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertEqual(ip.getBytesPerPixel(), 1)
def test_01_05_set_temp_current_image(self):
ip = I.load_imageplus(self.file_name)
W.set_temp_current_image(ip)
def test_01_08_get_height(self):
file_name = os.path.join(
self.root_dir, "ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
target = load_image(file_name)
self.assertEqual(ip.getHeight(), target.shape[0])
def test_01_06_get_temp_current_image(self):
ip = I.load_imageplus(self.file_name)
W.set_temp_current_image(ip)
ip_other = W.get_temp_current_image()
self.assertEqual(ip.getID(), ip_other.getID())
def test_01_11_get_n_dimensions(self):
file_name = os.path.join(
self.root_dir, "ExampleSBSImages", "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertEqual(ip.getNDimensions(), 2)
def test_01_08_get_current_image(self):
ip = I.load_imageplus(self.file_name)
W.set_current_image(ip)
ip_out = W.get_current_image()
self.assertEqual(ip.getID(), ip_out.getID())
def test_01_02_get_id(self):
file_name = os.path.join(sbs_dir, "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
ip.getID()
def test_01_13_get_channel_processor(self):
file_name = os.path.join(sbs_dir, "Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
p = ip.getChannelProcessor()
self.assertTrue(J.to_string(p).startswith("ip"))
def test_01_06_get_temp_current_image(self):
ip = I.load_imageplus(self.file_name)
W.set_temp_current_image(ip)
ip_other = W.get_temp_current_image()
self.assertEqual(ip.getID(), ip_other.getID())
def test_01_11_get_n_dimensions(self):
file_name = os.path.join(self.root_dir, "ExampleSBSImages",
"Channel1-01-A-01.tif")
ip = I.load_imageplus(file_name)
self.assertEqual(ip.getNDimensions(), 2)
def test_01_02_get_id_list(self):
ip = I.load_imageplus(self.file_name)
W.set_current_image(ip)
id_list = W.get_id_list()
self.assertTrue(ip.getID() in id_list)
def test_01_08_get_current_image(self):
ip = I.load_imageplus(self.file_name)
W.set_current_image(ip)
ip_out = W.get_current_image()
self.assertEqual(ip.getID(), ip_out.getID())