def find_stars_fld2():
## Loop through all the different data sets
for key in dict_suffix.keys():
img = dict_images[key]
suf = dict_suffix[key]
sky = dict_skies[key]
fwhm = dict_fwhm[key]
print('Working on: {1:s} {0:s}'.format(key, suf))
print(' Images: ', img)
print(' Sky: ', sky)
img_files = [
out_dir +
'sta{img:03d}{suf:s}_scan_clean.fits'.format(img=ii, suf=suf)
for ii in img
]
redu.find_stars(img_files,
fwhm=fwhm,
threshold=8,
N_passes=2,
plot_psf_compare=False,
mask_file=calib_dir + 'mask.fits')
return
def find_stars_pleiades_closed():
reduce_dir = root_dir + 'reduce/pleiades/'
fnum1 = [
27, 28, 29, 30, 31, 35, 36, 37, 44, 45, 46, 47, 48, 49, 53, 54, 55, 62,
63, 64
]
fnum2 = [
74, 75, 76, 89, 90, 91, 101, 102, 103, 110, 111, 112, 123, 124, 125,
132, 133
]
fnum3 = [
134, 141, 142, 143, 153, 154, 155, 162, 163, 164, 171, 172, 173, 183,
184, 185
]
fnum4 = [
192, 193, 194, 201, 202, 203, 213, 214, 215, 222, 223, 224, 228, 229,
230, 237
]
fnum5 = [
238, 239, 249, 250, 251, 258, 259, 260, 267, 268, 269, 278, 279, 284,
285, 290
]
fnum6 = [291, 296, 297, 309, 310, 311, 318, 319, 320]
fnum = fnum1 + fnum2 + fnum3 + fnum4 + fnum5 + fnum6
img_files = [
reduce_dir + 'obj_c{0:03d}_clean.fits'.format(ii) for ii in fnum
]
reduce_fli.find_stars(img_files, fwhm=3, threshold=6)
return
def analyze_stacks():
open_img_files = [
stacks_dir + 'FLD2_stack_open_30.fits',
stacks_dir + 'FLD2_stack_open_60.fits'
]
closed_img_files = [
stacks_dir + 'FLD2_stack_closed_3S_30.fits',
stacks_dir + 'FLD2_stack_closed_3L_30.fits',
stacks_dir + 'FLD2_stack_closed_4_30.fits',
stacks_dir + 'FLD2_stack_closed_3S_60.fits',
stacks_dir + 'FLD2_stack_closed_3L_60.fits',
stacks_dir + 'FLD2_stack_closed_4_60.fits'
]
#Find stars in image
reduce_fli.find_stars(open_img_files,
fwhm=8,
threshold=10,
N_passes=2,
plot_psf_compare=False)
reduce_fli.find_stars(closed_img_files,
fwhm=4,
threshold=10,
N_passes=2,
plot_psf_compare=False)
# Calc stats on all the stacked images
reduce_fli.calc_star_stats(open_img_files + closed_img_files,
output_stats=stats_dir + 'stats_stacks.fits')
return
def find_stars_pleiades_closed():
data_dir = root_dir + 'reduce/'
os.chdir(data_dir)
fnum1 = [
7, 8, 12, 15, 16, 19, 20, 26, 27, 30, 31, 34, 35, 38, 39, 44, 45, 48,
49, 52
]
fnum2 = [
53, 56, 57, 62, 63, 66, 67, 70, 71, 74, 75, 80, 81, 84, 85, 88, 89, 92,
93
]
fnum3 = [
98, 99, 102, 103, 106, 107, 110, 111, 116, 117, 120, 121, 124, 125,
128, 129
]
fnum4 = [
155, 156, 163, 164, 167, 168, 171, 172, 177, 178, 183, 184, 191, 192,
198, 199
]
fnum5 = [204, 205, 210, 211, 216, 217, 222, 223, 226, 227, 230, 231]
fnum = fnum1 #+ fnum2 + fnum3 + fnum4 + fnum5
img_files = ['obj_c{0:03d}_clean.fits'.format(ii) for ii in fnum]
reduce_fli.find_stars(img_files, fwhm=5, threshold=6)
return
def analyze_stacks():
# Loop through all the different data sets and reduce them.
all_images = []
for key in dict_suffix.keys():
img = dict_images[key]
suf = dict_suffix[key]
fwhm = dict_fwhm[key]
print('Working on: {1:s} {0:s}'.format(key, suf))
print(' Images: ', img)
print(' Fwhm: ', str(fwhm))
image_file = [stacks_dir + 'beehive_stack_' + suf + '.fits']
all_images.append(image_file[0])
reduce_fli.find_stars(image_file, fwhm=fwhm, threshold=3, N_passes=2, plot_psf_compare=False,
mask_file=calib_dir + 'mask.fits')
# Calc stats on all the stacked images
out_stats_file = stats_dir + 'stats_stacks.fits'
reduce_fli.calc_star_stats(all_images, output_stats=out_stats_file)
moffat.fit_moffat(all_images, out_stats_file, flux_percent=0.2)
# DEBUG - single threaded
# image_file = stacks_dir + 'beehive_stack_' + dict_suffix['open'] + '.fits'
# redu.find_stars_single(image_file, dict_fwhm['open'], 3, 2, False, calib_dir + 'mask.fits')
return
def find_stars_beehive():
# Loop through all the different data sets and reduce them.
for key in dict_suffix.keys():
img = dict_images[key]
suf = dict_suffix[key]
sky = dict_skies[key]
# o/c loop distinction
fwhm = 5 if re.search('c_', key) else 8
thrsh = 10 if re.search('c_', key) else 5
print('Working on: {1:s} {0:s}'.format(key, suf))
print(' Images: ', img)
print(' Sky: ', sky)
img_files = [out_dir + 'sta{img:03d}{suf:s}_scan_clean.fits'.format(img=ii, suf=suf) for ii in img]
# Taken from working branch version args
reduce_fli.find_stars(img_files, fwhm=fwhm, threshold = thrsh, plot_psf_compare=False, mask_file=calib_dir+'mask.fits')
# DEBUG - single threaded
# fmt = '{dir}sta{img:03d}{suf:s}_scan_clean.fits'
# image_file = fmt.format(dir=out_dir, img=dict_images['LS_c'][0], suf=dict_suffix['LS_c'][0])
# redu.find_stars_single(image_file, dict_fwhm['LS_c'], 3, 2, False, calib_dir + 'mask.fits')
return
def find_stars_fld2():
## Loop through all the different data sets
#for key in ['set_name']: ## Single key setup
for key in dict_suffix.keys():
img = dict_images[key]
suf = dict_suffix[key]
filt = dict_filt[key]
fwhm = dict_fwhm[key]
thrsh = 10
peak_max = 30000
sharp_lim = 0.9
print('Working on: {1:s} {0:s}'.format(key, suf))
print(' Images: ', img)
print(' filt: ', filt)
img_files = [out_dir + 'sta{img:03d}{suf:s}_scan_clean.fits'.format(img=ii, suf=suf) for ii in img]
#redu.find_stars(img_files, fwhm=fwhm, threshold=8, N_passes=2, plot_psf_compare=False,
# mask_file=calib_dir+f'mask_{filt}.fits')
redu.find_stars(img_files, fwhm=fwhm, threshold=thrsh, N_passes=2, plot_psf_compare=False,
mask_file=calib_dir+f'mask_{filt}.fits', peak_max=peak_max, sharp_lim=sharp_lim)
## DEBUG - single threaded
# fmt = '{dir}sta{img:03d}{suf:s}_scan_clean.fits'
# image_file = fmt.format(dir=out_dir, img=dict_images['LS_c'][0], suf=dict_suffix['LS_c'][0])
# redu.find_stars_single(image_file, dict_fwhm['LS_c'], 3, 2, False, calib_dir + 'mask.fits')
return
def analyze_stacks():
## Loop through all the different data sets
#for key in ['set_name']: ## Single key setup
all_images = []
for key in dict_suffix.keys():
img = dict_images[key]
suf = dict_suffix[key]
# o/c loop distinction
fwhm = 15 if re.search('open', key) else 8
thrsh = 5 if re.search('open', key) else 6
print('Working on: {1:s} {0:s}'.format(key, suf))
print(' Images: ', img)
print(' Fwhm: ', str(fwhm))
print(' thrsh: ', str(thrsh))
image_file = [stacks_dir + 'beehive_stack_' + suf + '.fits']
all_images.append(image_file[0])
redu.find_stars(image_file, fwhm=fwhm, threshold=thrsh, N_passes=2, plot_psf_compare=False,
mask_file=calib_dir + 'domemask.fits')
## Calc stats on all the stacked images
out_stats_file = stats_dir + 'stats_stacks.fits'
redu.calc_star_stats(all_images, output_stats=out_stats_file)
moffat.fit_moffat(all_images, out_stats_file, flux_percent=0.2)
## DEBUG - single threaded
# image_file = stacks_dir + 'fld2_stack_' + dict_suffix['open'] + '.fits'
# redu.find_stars_single(image_file, dict_fwhm['open'], 3, 2, False, calib_dir + 'mask.fits')
return
def find_stars_pleiades_open():
reduce_dir = root_dir + 'reduce/pleiades/'
fnum1 = [
56, 57, 58, 65, 66, 67, 77, 78, 79, 92, 93, 94, 98, 99, 100, 104, 105,
106
]
fnum2 = [
113, 114, 115, 126, 127, 128, 135, 136, 137, 144, 145, 146, 156, 157,
158
]
fnum3 = [
165, 166, 167, 174, 175, 176, 186, 187, 188, 195, 196, 197, 204, 205,
206
]
fnum4 = [
216, 217, 218, 231, 232, 233, 240, 241, 242, 252, 253, 254, 261, 262,
263
]
fnum5 = [
270, 271, 272, 280, 281, 286, 287, 292, 293, 299, 300, 301, 302, 312,
313
]
fnum6 = [314, 321, 322, 323]
fnum = fnum1 + fnum2 + fnum3 + fnum4 + fnum5 + fnum6
img_files = [
reduce_dir + 'obj_o{0:03d}_clean.fits'.format(ii) for ii in fnum
]
reduce_fli.find_stars(img_files, fwhm=5, threshold=6)
return
def find_stars_pleiades_ttf():
reduce_dir = root_dir + 'reduce/pleiades/'
fnum1 = [
32, 33, 34, 38, 39, 40, 50, 51, 52, 59, 60, 61, 68, 69, 70, 80, 81, 82,
86
]
fnum2 = [
87, 88, 95, 96, 97, 107, 108, 109, 120, 121, 122, 129, 130, 131, 138,
139
]
fnum3 = [
140, 150, 151, 152, 159, 160, 161, 168, 169, 170, 180, 181, 182, 189,
190
]
fnum4 = [
191, 198, 199, 200, 210, 211, 212, 219, 220, 221, 225, 226, 227, 234,
235
]
fnum5 = [
236, 246, 247, 248, 255, 256, 257, 264, 265, 266, 276, 277, 282, 283,
288
]
fnum6 = [289, 294, 295, 306, 307, 308, 315, 316, 317]
fnum = fnum1 + fnum2 + fnum3 + fnum4 + fnum5 + fnum6
img_files = [
reduce_dir + 'obj_ttf{0:03d}_clean.fits'.format(ii) for ii in fnum
]
reduce_fli.find_stars(img_files, fwhm=5, threshold=6)
return
def find_stars_pleiades_open():
reduce_dir = root_dir + 'reduce/pleiades/'
# Old Naming Scheme
# fnum1 = [10, 11, 14, 15, 18, 19, 24, 25, 28, 29, 34, 35, 38, 39, 40, 41, 44, 45, 50, 51, 55]
# fnum2 = [60, 61, 64, 65, 68, 69, 74, 75, 78, 79, 82, 83, 88, 89, 92, 93, 96, 97, 102, 103]
# fnum = fnum1 + fnum2
# img_files = [reduce_dir + 'obj{0:03d}_clean.fits'.format(ii) for ii in fnum]
# reduce_fli.find_stars(img_files, fwhm=5, threshold=6)
# New Naming Scheme
#fnum1 = [106, 107, 110, 111, 116, 117, 120, 121, 124, 125, 130, 131, 134, 135, 138, 139, 144]
#fnum2 = [145, 148, 149, 152, 153, 158, 159, 162, 163, 166, 167, 172, 173, 176, 177, 180, 181]
fnum3 = [
184, 185, 190, 191, 194, 195, 198, 199, 202, 203, 208, 209, 212, 213,
216, 217
]
fnum4 = [
220, 221, 226, 227, 230, 231, 235, 238, 239, 244, 245, 248, 249, 252,
253
]
#fnum = fnum1 + fnum2 + fnum3 + fnum4
fnum = fnum3 + fnum4
img_files = [
reduce_dir + 'obj_o{0:03d}_clean.fits'.format(ii) for ii in fnum
]
reduce_fli.find_stars(img_files, fwhm=5, threshold=6)
return
def find_stars_fld2():
## Loop through all the different data sets
#for key in ['set_name']: ## Single key setup
for key in dict_suffix.keys():
img = dict_images[key]
suf = dict_suffix[key]
sky = dict_skies[key]
fwhm = dict_fwhm[key]
print('Working on: {1:s} {0:s}'.format(key, suf))
print(' Images: ', img)
print(' Sky: ', sky)
img_files = [
out_dir +
'sta{img:03d}{suf:s}_scan_clean.fits'.format(img=ii, suf=suf)
for ii in img
]
redu.find_stars(img_files,
fwhm=fwhm,
threshold=6,
N_passes=2,
plot_psf_compare=False,
mask_file=calib_dir + 'mask.fits')
## DEBUG - single threaded
# fmt = '{dir}sta{img:03d}{suf:s}_scan_clean.fits'
# image_file = fmt.format(dir=out_dir, img=dict_images['LS_c'][0], suf=dict_suffix['LS_c'][0])
# redu.find_stars_single(image_file, dict_fwhm['LS_c'], 3, 2, False, calib_dir + 'mask.fits')
return
def find_stars_pleiades_binned_open():
data_dir = root_dir + 'reduce/'
os.chdir(data_dir)
fnum1 = [
9, 10, 13, 14, 17, 18, 21, 22, 28, 29, 32, 33, 36, 37, 40, 41, 46, 47,
50, 51
]
fnum2 = [
54, 55, 58, 59, 64, 65, 68, 69, 72, 73, 76, 77, 82, 83, 86, 87, 90, 91,
94, 95
]
fnum3 = [
100, 101, 104, 105, 108, 109, 112, 113, 118, 119, 122, 123, 126, 127,
130, 131
]
fnum4 = [
141, 142, 149, 150, 179, 180, 185, 186, 193, 194, 200, 201, 206, 207,
212, 213, 218, 219
]
fnum = fnum1 + fnum2 + fnum3 + fnum4
img_files = ['obj_o{0:03d}_clean.fits'.format(ii) for ii in fnum]
reduce_fli.find_stars(img_files, fwhm=5, threshold=6)
return
def find_stars_pleiades_tt():
data_dir = root_dir + 'reduce/'
os.chdir(data_dir)
fnum = [134, 135, 136, 137, 138, 139, 140]
img_files = ['obj_tt{0:03d}_clean.fits'.format(ii) for ii in fnum]
reduce_fli.find_stars(img_files, fwhm=5, threshold=6)
return
def find_stars_orion():
# Open Loop
img_files = [out_dir + 'obj{0:03d}_o_scan_clean.fits'.format(ii) for ii in fnum_o]
reduce_fli.find_stars(img_files, fwhm=8, threshold=10, N_passes=2, plot_psf_compare=False, \
mask_flat=flat_dir+"flat.fits", mask_min=0.8, mask_max=1.4, \
left_slice =20, right_slice=20, top_slice=25, bottom_slice=25)
#Closed Loop - 4W
img_files = [out_dir + 'obj{0:03d}LS4WFS_c_scan_clean.fits'.format(ii) for ii in fnum_c_4W]
def find_stars_beehive():
## Loop through all the different data sets
#for key in ['set_name']: ## Single key setup
for key in dict_suffix.keys():
#for key in ['LS_3wfs_s_1']:
img = dict_images[key]
suf = dict_suffix[key]
sky = dict_sky[key]
fwhm = dict_fwhm[key]
sharp_lim = 0.9 #dict_sharp[key]
thrsh = 4
peak_max = 30000
print('Working on: {1:s} {0:s}'.format(key, suf))
print(' Images: ', img)
print(' Sky: ', sky)
print(' Rebin: ', rebin_data)
if rebin_data:
img_files = [
out_dir +
'bin2/sta{img:03d}{suf:s}_scan_clean_bin2.fits'.format(img=ii,
suf=suf)
for ii in img
]
mask_f = calib_dir + 'domemask_bin2.fits'
fwhm = fwhm / 2
else:
img_files = [
out_dir +
'sta{img:03d}{suf:s}_scan_clean.fits'.format(img=ii, suf=suf)
for ii in img
]
mask_f = calib_dir + 'domemask.fits'
# find stars on a starlist in parallel
redu.find_stars(img_files,
fwhm=fwhm,
threshold=thrsh,
plot_psf_compare=False,
mask_file=mask_f,
peak_max=peak_max,
sharp_lim=sharp_lim)
## DEBUG - single threaded
# fmt = '{dir}sta{img:03d}{suf:s}_scan_clean.fits'
# image_file = fmt.format(dir=out_dir, img=dict_images['LS_c'][0], suf=dict_suffix['LS_c'][0])
# redu.find_stars_single(image_file, dict_fwhm['LS_c'], 3, 2, False, calib_dir + 'mask.fits')
return
def find_stars_FLD2():
data_dir = root_dir + 'reduce/FLD2/'
# Open Loop
fnum = [63, 67, 71, 75, 80, 84, 88, 92, 96, 100, 104, 108, 112, 124]
img_files = [
data_dir + 'obj{0:04d}_o_clean.fits'.format(ii) for ii in fnum
]
reduce_fli.find_stars(img_files, fwhm=8, threshold=10)
# Closed Loop
fnum = [64, 68, 72, 76, 77, 81, 85, 89, 93, 97, 101, 105, 109, 113]
img_files = [
data_dir + 'obj{0:04d}_c_clean.fits'.format(ii) for ii in fnum
]
reduce_fli.find_stars(img_files, fwhm=6, threshold=6)
#Closed A
fnum = [65, 69, 73, 78, 82, 86, 90, 94, 98, 102, 106, 110, 114]
img_files = [
data_dir + 'obj{0:04d}_cA_clean.fits'.format(ii) for ii in fnum
]
reduce_fli.find_stars(img_files, fwhm=6, threshold=6)
# Closed B
fnum = [66, 70, 74, 79, 83, 87, 91, 95, 99, 103, 107, 111, 115]
img_files = [
data_dir + 'obj{0:04d}_cB_clean.fits'.format(ii) for ii in fnum
]
reduce_fli.find_stars(img_files, fwhm=6, threshold=6)
return
def find_stars_FLD2():
# Open Loop
img_files = [out_dir + 'obj{0:04d}_o_clean.fits'.format(ii) for ii in fnum_o+fnum_o_2filt]
reduce_fli.find_stars(img_files, fwhm=9, threshold=10, N_passes=2, plot_psf_compare=False, \
mask_flat=flat_dir+"flat.fits", mask_min=0.7, mask_max=1.4, \
left_slice =25, right_slice=0, top_slice=20, bottom_slice=0)
#Closed Loop - threeWFS_LS
img_files = [out_dir + 'obj{0:04d}_threeWFS_LS_clean.fits'.format(ii) for ii in fnum_threeWFS_LS+fnum_threeWFS_LS_2filt]
reduce_fli.find_stars(img_files, fwhm=6, threshold=10, N_passes=2, plot_psf_compare=False, \
mask_flat=flat_dir+"flat.fits", mask_min=0.7, mask_max=1.4, \
left_slice =25, right_slice=0, top_slice=20, bottom_slice=0)
#Closed Loop - threeWFSLS_B2_c
img_files = [out_dir + 'obj{0:04d}_threeWFSLS_B2_c_clean.fits'.format(ii) for ii in fnum_threeWFSLS_B2_c+fnum_threeWFSLS_B2_c_2filt]
reduce_fli.find_stars(img_files, fwhm=6, threshold=10, N_passes=2, plot_psf_compare=False, \
mask_flat=flat_dir+"flat.fits", mask_min=0.7, mask_max=1.4, \
left_slice =25, right_slice=0, top_slice=20, bottom_slice=0)
#Closed Loop - threeWFSMean_B2_c
img_files = [out_dir + 'obj{0:04d}_threeWFSMean_B2_c_clean.fits'.format(ii) for ii in fnum_threeWFSMean_B2_c+fnum_threeWFSMean_B2_c_2filt]
reduce_fli.find_stars(img_files, fwhm=6, threshold=10, N_passes=2, plot_psf_compare=False, \
mask_flat=flat_dir+"flat.fits", mask_min=0.7, mask_max=1.4, \
left_slice =25, right_slice=0, top_slice=20, bottom_slice=0)
return
def analyze_stacks_I():
open_img_files = [stacks_dir + 'beehive_stack_open_I.fits']
closed_img_files = [stacks_dir + 'beehive_stack_closed_I.fits']
#Find stars in image
#reduce_fli.find_stars(open_img_files, fwhm=10, threshold=10, N_passes=2, plot_psf_compare=False, \
# mask_flat=flat_dir+"flat.fits", mask_min=0.7, mask_max=1.4, \
# left_slice =25, right_slice=0, top_slice=25, bottom_slice=0)
reduce_fli.find_stars(closed_img_files, fwhm=7, threshold=10, N_passes=2, plot_psf_compare=False, \
mask_flat=flat_dir+"flat.fits", mask_min=0.7, mask_max=1.4, \
left_slice =25, right_slice=0, top_slice=25, bottom_slice=0)
return
def find_stars_FLD2():
# Open Loop
img_files = [
out_dir + 'obj{0:04d}_o_clean.fits'.format(ii) for ii in fnum_o
]
reduce_fli.find_stars(img_files, fwhm=8, threshold=10)
#Closed Loop
img_files = [
out_dir + 'obj{0:04d}_c_clean.fits'.format(ii) for ii in fnum_c
]
reduce_fli.find_stars(img_files, fwhm=6, threshold=6)
return
def run_find_stars():
work_dir = '/Users/jlu/work/imaka/pleiades/press_release/'
img_files = [
'west_stack_open.fits', 'west_stack_ttf.fits', 'west_stack_closed.fits'
]
for ii in range(len(img_files)):
img_files[ii] = work_dir + img_files[ii]
reduce_fli.find_stars(img_files, fwhm=5, threshold=4, N_passes=2)
# Calc stats on all the stacked images
reduce_fli.calc_star_stats(img_files,
output_stats=work_dir + 'stats_stacks.fits')
return
def find_stars_beehive():
# Open Loop
img_files = [
out_dir + 'obj{0:03d}_o_scan_clean.fits'.format(ii) for ii in fnum_o
]
#reduce_fli.find_stars(img_files, fwhm=8, threshold=6, N_passes=2, plot_psf_compare=False, \
# mask_flat=flat_dir+"flat.fits", mask_min=0.8, mask_max=1.4, \
# left_slice =20, right_slice=20, top_slice=25, bottom_slice=25)
#Closed Loop - 4W
img_files = [
out_dir + 'obj{0:03d}LS4WFS_c_scan_clean.fits'.format(ii)
for ii in fnum_c_4W
]
#reduce_fli.find_stars(img_files, fwhm=7, threshold=6, N_passes=2, plot_psf_compare=False, \
# mask_flat=flat_dir+"flat.fits", mask_min=0.8, mask_max=1.4, \
# left_slice =20, right_slice=20, top_slice=25, bottom_slice=25)
#Closed Loop - B2
img_files = [
out_dir + 'obj{0:03d}LS4WFS_B2_c_scan_clean.fits'.format(ii)
for ii in fnum_c_B2
]
#reduce_fli.find_stars(img_files, fwhm=7, threshold=6, N_passes=2, plot_psf_compare=False, \
# mask_flat=flat_dir+"flat.fits", mask_min=0.8, mask_max=1.4, \
# left_slice =20, right_slice=20, top_slice=25, bottom_slice=25)
#Closed Loop - zc
img_files = [
out_dir + 'obj{0:03d}LS4WFS_zc11_c_scan_clean.fits'.format(ii)
for ii in fnum_c_zc
]
#reduce_fli.find_stars(img_files, fwhm=7, threshold=6, N_passes=2, plot_psf_compare=False, \
# mask_flat=flat_dir+"flat.fits", mask_min=0.8, mask_max=1.4, \
# left_slice =20, right_slice=20, top_slice=25, bottom_slice=25)
#Tip tilt
img_files = [
out_dir + 'obj{0:03d}tip_tilt_scan_clean.fits'.format(ii)
for ii in fnum_tt
]
reduce_fli.find_stars(img_files, fwhm=7, threshold=6, N_passes=2, plot_psf_compare=False, \
mask_flat=flat_dir+"flat.fits", mask_min=0.8, mask_max=1.4, \
left_slice =20, right_slice=20, top_slice=25, bottom_slice=25)
return
def find_stars_pleiades():
##########
# Open Loop
##########
fnum = np.arange(57, 67)
img_files = ['{0:s}/obj{1:03d}_clean.fits'.format(data_dir, ii) for ii in fnum]
reduce_fli.find_stars(img_files, fwhm=2, threshold=6)
##########
# Closed Loop
##########
fnum = np.arange(47, 57)
img_files = ['{0:s}/obj{1:03d}_clean.fits'.format(data_dir, ii) for ii in fnum]
reduce_fli.find_stars(img_files, fwhm=2, threshold=6)
return
def analyze_stacks():
data_dir = root_dir + 'reduce/stacks/'
stats_dir = root_dir + 'reduce/stats/'
img_files = [data_dir + 'FLD2_stack_open.fits',
data_dir + 'FLD2_stack_closed.fits',
data_dir + 'FLD2_stack_closedA.fits',
data_dir + 'FLD2_stack_closedB.fits',
data_dir + 'FLD2_stack_closedC.fits',
data_dir + 'FLD2_stack_closedD.fits']
#Find stars in image
reduce_fli.find_stars(img_files, fwhm=5, threshold=10, N_passes=2, plot_psf_compare=False)
# Calc stats on all the stacked images
reduce_fli.calc_star_stats(img_files, output_stats= stats_dir + 'stats_stacks.fits')
return
def find_stars_pleiades_ttf():
data_dir = root_dir + 'reduce/'
os.chdir(data_dir)
#
fnum1 = [
143, 144, 145, 146, 147, 148, 151, 152, 153, 154, 157, 157, 158, 161,
162, 165, 166
]
fnum2 = [
169, 170, 173, 174, 175, 176, 181, 182, 187, 188, 189, 190, 202, 203,
208, 209, 214
]
fnum3 = [215, 220, 221, 224, 225, 228, 229]
fnum = fnum1 + fnum2 + fnum3
img_files = ['obj_ttf{0:03d}_clean.fits'.format(ii) for ii in fnum]
reduce_fli.find_stars(img_files, fwhm=5, threshold=6)
return
def analyze_stacks():
open_img_files = [stacks_dir + 'FLD2_stack_open.fits']
closed_img_files = [stacks_dir + 'FLD2_stack_threeWFS_LS_c.fits']
#Find stars in image
reduce_fli.find_stars(open_img_files, fwhm=10, threshold=100, N_passes=2, plot_psf_compare=False, \
mask_flat=flat_dir+"flat.fits", mask_min=0.7, mask_max=1.4, \
left_slice =25, right_slice=0, top_slice=25, bottom_slice=0)
reduce_fli.find_stars(closed_img_files, fwhm=7, threshold=30, N_passes=2, plot_psf_compare=False, \
mask_flat=flat_dir+"flat.fits", mask_min=0.7, mask_max=1.4, \
left_slice =25, right_slice=0, top_slice=25, bottom_slice=0)
# Calc stats on all the stacked images
#reduce_fli.calc_star_stats(open_img_files+closed_img_files, output_stats= stats_dir + 'stats_stacks.fits')
return
def analyze_stacks():
## EDITED FOR 4F DATA
## Loop through all the different data sets
#for key in ['set_name']: ## Single key setup
all_images = []
for key in dict_suffix.keys():
img = dict_images[key]
suf = dict_suffix[key]
fwhm = dict_fwhm[key]
filt = dict_filt[key]
thrsh = 10
peak_max = 30000
sharp_lim = 0.9
print('Working on: {1:s} {0:s}'.format(key, suf))
print(' Images: ', img)
print(' Fwhm: ', str(fwhm))
image_file = [stacks_dir + 'fld2_stack_' + suf + '_' + filt + '.fits'
] ## EDITED LINE
all_images.append(image_file[0])
#redu.find_stars(image_file, fwhm=fwhm, threshold=6, N_passes=2, plot_psf_compare=False, mask_file=calib_dir + f'mask_{filt}.fits')
redu.find_stars(image_file,
fwhm=fwhm,
threshold=thrsh,
N_passes=2,
plot_psf_compare=False,
mask_file=calib_dir + f'mask_{filt}.fits',
peak_max=peak_max,
sharp_lim=sharp_lim)
## Calc stats on all the stacked images
out_stats_file = stats_dir + 'stats_stacks.fits'
redu.calc_star_stats(all_images, output_stats=out_stats_file)
moffat.fit_moffat(all_images, out_stats_file, flux_percent=0.2)
## DEBUG - single threaded
# image_file = stacks_dir + 'fld2_stack_' + dict_suffix['open'] + '.fits'
# redu.find_stars_single(image_file, dict_fwhm['open'], 3, 2, False, calib_dir + 'mask.fits')
return
def find_stars_beehive():
## Loop through all the different data sets
#for key in ['set_name']: ## Single key setup
#for key in dict_suffix.keys():
for key in ['LS_3wfs_r2', 'LS_5wfs_r2', 'open_r2']:
#for key in []:
img = dict_images[key]
suf = dict_suffix[key]
sky = sky_dir + 'beehive_sky.fits'
fwhm = dict_fwhm[key]
thrsh = 10
peak_max = 30000
sharp_lim = dict_sharp[key]
print('Working on: {1:s} {0:s}'.format(key, suf))
print(' Images: ', img)
print(' Sky: ', sky)
print(' Fwhm: ', str(fwhm))
print(' Thresh: ', str(thrsh))
img_files = [
out_dir +
'sta{img:03d}{suf:s}_scan_clean.fits'.format(img=ii, suf=suf)
for ii in img
]
# Taken from working branch version args
redu.find_stars(img_files,
fwhm=fwhm,
threshold=thrsh,
plot_psf_compare=False,
mask_file=calib_dir + 'domemask.fits',
peak_max=peak_max,
sharp_lim=sharp_lim)
## DEBUG - single threaded
#key_i = 'LS_5wfs_r2'
#fmt = '{dir}sta{img:03d}{suf:s}_scan_clean.fits'
#image_file = fmt.format(dir=out_dir, img=dict_images[key_i][0], suf=dict_suffix[key_i])
#redu.find_stars_single(image_file, dict_fwhm[key_i], 10, 2, False, calib_dir + 'mask.fits', sharp_lim=0.6, peak_max=30000)
return
def find_stars_pleiades_closed():
reduce_dir = root_dir + 'reduce/pleiades/'
##########
# first half of night
##########
fnum1 = [
31, 32, 33, 40, 41, 42, 52, 53, 54, 55, 64, 65, 66, 67, 79, 80, 81, 82,
91, 92
]
fnum2 = [
93, 94, 417, 448, 479, 577, 578, 579, 580, 581, 590, 591, 592, 593
]
fnum = fnum1 + fnum2
img_files = [
'{0:s}/obj_c{1:03d}_clean.fits'.format(reduce_dir, ii) for ii in fnum
]
reduce_fli.find_stars(img_files, fwhm=3, threshold=6)
##########
# second half of night
##########
fnum1 = [
605, 606, 607, 608, 618, 619, 620, 632, 633, 634, 635, 1006, 1007, 1008
]
fnum2 = [
1009, 1018, 1019, 1020, 1021, 1030, 1031, 1032, 1033, 1045, 1046, 1047,
1048
]
fnum3 = [
1057, 1058, 1059, 1060, 1069, 1070, 1071, 1072, 1084, 1085, 1086, 1087,
1096
]
fnum4 = [1097, 1098, 1099]
fnum = fnum1 + fnum2 + fnum3 + fnum4
img_files = [
'{0:s}/obj_c{1:03d}_clean.fits'.format(reduce_dir, ii) for ii in fnum
]
reduce_fli.find_stars(img_files, fwhm=3, threshold=6)
return
def find_stars_FLD2():
# Open Loop
img_files = [
out_dir + 'obj{0:03d}_o_scan_clean.fits'.format(ii) for ii in fnum_o
]
reduce_fli.find_stars(img_files, fwhm=10, threshold=20, N_passes=2, plot_psf_compare=False, \
mask_flat=flat_dir+"flat.fits", mask_min=0.7, mask_max=1.4, \
left_slice =25, right_slice=0, top_slice=25, bottom_slice=0)
#Closed Loop - threeWFS_LS
img_files = [
out_dir + 'obj{0:03d}threeWFS_LS_c_scan_clean.fits'.format(ii)
for ii in fnum_c
]
reduce_fli.find_stars(img_files, fwhm=7, threshold=30, N_passes=2, plot_psf_compare=False, \
mask_flat=flat_dir+"flat.fits", mask_min=0.7, mask_max=1.4, \
left_slice =25, right_slice=0, top_slice=25, bottom_slice=25)
return