def get_rlimsp_phos_stmts(filename, rlimsp_medline_json, rlimsp_pmc_json):
# Add on all the RLIMS-P statements loaded separately
rp_stmts1 = rlimsp.process_from_json_file(rlimsp_medline_json,
doc_id_type='pmid').statements
rp_stmts2 = rlimsp.process_from_json_file(rlimsp_pmc_json).statements
stmts = rp_stmts1 + rp_stmts2
with open(filename, 'wb') as f:
pickle.dump(stmts, f)
return stmts
def test_tyrosine_grounding():
here = os.path.dirname(os.path.abspath(__file__))
fname = os.path.join(here, 'rlimsp_site.json')
rp = rlimsp.process_from_json_file(fname)
assert len(rp.statements) == 1
stmt = rp.statements[0]
assert stmt.residue == 'Y'
assert stmt.position == '705'
def test_tyrosine_grounding():
here = os.path.dirname(os.path.abspath(__file__))
fname = os.path.join(here, 'rlimsp_site.json')
rp = rlimsp.process_from_json_file(fname)
assert len(rp.statements) == 1
stmt = rp.statements[0]
assert stmt.residue == 'Y'
assert stmt.position == '705'