class Article(object):
"""Article ingestion workflow for Literature collection."""
name = "HEP"
data_type = "hep"
workflow = (
PRE_PROCESSING +
NOTIFY_IF_SUBMISSION +
MARK_IF_MATCH_IN_HOLDINGPEN +
CHECK_IS_UPDATE +
STOP_IF_EXISTING_SUBMISSION +
CHECK_AUTO_APPROVE +
PROCESS_HOLDINGPEN_MATCHES +
ENHANCE_RECORD +
HALT_FOR_APPROVAL_IF_NEW_OR_STOP_IF_NOT_RELEVANT +
[
IF_ELSE(
is_record_accepted,
(
POSTENHANCE_RECORD +
STORE_RECORD +
SEND_TO_LEGACY +
WAIT_FOR_LEGACY_WEBCOLL +
NOTIFY_ACCEPTED +
NOTIFY_CURATOR_IF_CORE
),
NOTIFY_NOT_ACCEPTED,
),
IF(
is_submission,
close_ticket(ticket_id_key="ticket_id"),
)
]
)
class Article(object):
"""Article ingestion workflow for Literature collection."""
name = "HEP"
data_type = "hep"
workflow = (
[
# Make sure schema is set for proper indexing in Holding Pen
set_schema,
] + ADD_MARKS + DELETE_AND_STOP_IF_NEEDED + ENHANCE_RECORD +
# TODO: Once we have a way to resolve merges, we should
# use that instead of stopping
CHECK_IF_MERGE_AND_STOP_IF_SO +
CHECK_IF_SUBMISSION_AND_ASK_FOR_APPROVAL + [
IF_ELSE(
is_record_accepted,
(
POSTENHANCE_RECORD + SEND_TO_LEGACY_AND_WAIT +
NOTIFY_USER_OR_CURATOR + [
# TODO: once legacy is out, this should become
# unconditional, and remove the SEND_TO_LEGACY_AND_WAIT
# steps
IF_NOT(in_production_mode, [store_record]),
]),
NOTIFY_NOT_ACCEPTED,
),
IF(
is_submission,
[close_ticket(ticket_id_key="ticket_id")],
)
])
class Author(object):
"""Author ingestion workflow for HEPNames/Authors collection."""
name = "Author"
data_type = "authors"
workflow = [
# Make sure schema is set for proper indexing in Holding Pen
set_schema,
# Emit record signals to receive metadata enrichment
emit_record_signals,
IF_ELSE(is_marked('is-update'), [
send_robotupload(marcxml_processor=hepnames2marc,
mode="holdingpen"),
create_ticket(
template="authors/tickets/curator_update.html",
queue="Authors_cor_user",
context_factory=update_ticket_context,
),
], [
create_ticket(template="authors/tickets/curator_new.html",
queue="Authors_add_user",
context_factory=new_ticket_context),
reply_ticket(template="authors/tickets/user_new.html",
context_factory=reply_ticket_context,
keep_new=True),
halt_record(action="author_approval",
message="Accept submission?"),
IF_ELSE(is_record_accepted, [
send_robotupload(marcxml_processor=hepnames2marc,
mode="insert"),
reply_ticket(template="authors/tickets/user_accepted.html",
context_factory=reply_ticket_context),
close_ticket(ticket_id_key="ticket_id"),
IF(curation_ticket_needed, [
create_ticket(
template="authors/tickets/curation_needed.html",
queue="AUTHORS_curation",
context_factory=curation_ticket_context,
ticket_id_key="curation_ticket_id"),
]),
], [
close_ticket(ticket_id_key="ticket_id"),
]),
]),
]
def test_close_ticket_calls_tickets_resolve(mock_resolve_ticket, mock_user):
mock_user.query.get.return_value = MockUser('*****@*****.**')
data = {
'titles': [
{
'title': 'Partial Symmetries of Weak Interactions'
},
],
}
extra_data = {'ticket_id': 1}
obj = MockObj(data, extra_data)
eng = MockEng()
_close_ticket = close_ticket()
_close_ticket(obj, eng)
mock_resolve_ticket.assert_called_with(extra_data['ticket_id'])
def test_close_ticket_calls_tickets_resolve(mock_resolve_ticket, mock_user):
mock_user.query.get.return_value = MockUser('*****@*****.**')
data = {
'titles': [
{'title': 'Partial Symmetries of Weak Interactions'},
],
}
extra_data = {'ticket_id': 1}
obj = MockObj(data, extra_data)
eng = MockEng()
_close_ticket = close_ticket()
_close_ticket(obj, eng)
mock_resolve_ticket.assert_called_with(
extra_data['ticket_id']
)
class Article(object):
"""Article ingestion workflow for Literature collection."""
name = "HEP"
data_type = "hep"
workflow = (
PRE_PROCESSING + STOP_IF_ALREADY_HARVESTED_ON_LEGACY_OR_TOO_OLD +
NOTIFY_IF_SUBMISSION + MARK_IF_MATCH_IN_HOLDINGPEN +
PROCESS_HOLDINGPEN_MATCHES + MARK_IF_UPDATE + ENHANCE_RECORD +
STOP_IF_EXISTING_SUBMISSION + HALT_FOR_APPROVAL + [
IF_ELSE(
is_record_accepted,
(POSTENHANCE_RECORD + STORE_RECORD + SEND_TO_LEGACY_AND_WAIT +
NOTIFY_ACCEPTED + NOTIFY_CURATOR_IF_CORE),
NOTIFY_NOT_ACCEPTED,
),
IF(
is_submission,
close_ticket(ticket_id_key="ticket_id"),
)
])
NOTIFY_ALREADY_EXISTING = [
reject_record('Article was already found on INSPIRE'),
mark('approved', False),
do_not_repeat('reply_ticket_user_submission_already_in_inspire')(
reply_ticket(
template=(
"literaturesuggest/tickets/"
"user_rejected_exists.html"
),
context_factory=reply_ticket_context
),
),
do_not_repeat('close_ticket_user_submission_already_in_inspire')(
close_ticket(ticket_id_key="ticket_id")
),
save_workflow,
stop_processing,
]
NOTIFY_ACCEPTED = [
IF(
is_submission,
do_not_repeat('reply_ticket_user_submission_accepted')(
reply_ticket(
template='literaturesuggest/tickets/user_accepted.html',
context_factory=reply_ticket_context,
),
),
IF(
is_submission,
do_not_repeat('reply_ticket_submission_not_accepted')(
reply_ticket(context_factory=reply_ticket_context), ),
)
]
NOTIFY_ALREADY_EXISTING = [
reject_record('Article was already found on INSPIRE'),
mark('approved', False),
do_not_repeat('reply_ticket_user_submission_already_in_inspire')(
reply_ticket(template=("literaturesuggest/tickets/"
"user_rejected_exists.html"),
context_factory=reply_ticket_context), ),
do_not_repeat('close_ticket_user_submission_already_in_inspire')(
close_ticket(ticket_id_key="ticket_id")),
save_workflow,
stop_processing,
]
NOTIFY_ACCEPTED = [
IF(
is_submission,
do_not_repeat('reply_ticket_user_submission_accepted')(reply_ticket(
template='literaturesuggest/tickets/user_accepted.html',
context_factory=reply_ticket_context,
), ),
),
]
NOTIFY_CURATOR_IF_NEEDED = [
class Article(object):
"""Article ingestion workflow for Literature collection."""
name = "HEP"
data_type = "hep"
workflow = [
# Make sure schema is set for proper indexing in Holding Pen
set_schema,
# Emit record signals to receive metadata enrichment
emit_record_signals,
# Query locally or via legacy search API to see if article
# is already ingested and this is an update
IF(article_exists, [
mark('match-found', True),
]),
IF_ELSE(
is_submission,
[
# Article matching for submissions
# ================================
IF(pending_in_holding_pen, [
mark('already-in-holding-pen', True),
]),
# Special RT integration for submissions
# ======================================
create_ticket(
template="literaturesuggest/tickets/curator_submitted.html",
queue="HEP_add_user",
context_factory=new_ticket_context,
ticket_id_key="ticket_id"),
reply_ticket(
template="literaturesuggest/tickets/user_submitted.html",
context_factory=reply_ticket_context,
keep_new=True),
],
[
# Article matching for non-submissions
# ====================================
# Query holding pen to see if we already have this article ingested
#
# NOTE on updates:
# If the same article has been harvested before and the
# ingestion has been completed, process is continued
# to allow for updates.
IF(pending_in_holding_pen, [
mark('already-in-holding-pen', True),
mark('delete', True),
]),
IF(
is_arxiv_paper,
[
# FIXME: This filtering step should be removed when this
# workflow includes arXiv CORE harvesting
IF(already_harvested, [
mark('already-ingested', True),
mark('stop', True),
]),
# FIXME: This filtering step should be removed when:
# old previously rejected records are treated
# differently e.g. good auto-reject heuristics or better
# time based filtering (5 days is quite random now).
IF(previously_rejected(), [
mark('already-ingested', True),
mark('stop', True),
]),
]),
IF(is_marked('delete'),
[update_old_object, delete_self_and_stop_processing]),
IF(is_marked('stop'), [stop_processing]),
]),
#
# Article Processing
# ==================
IF(is_arxiv_paper, [
arxiv_fulltext_download,
arxiv_plot_extract,
arxiv_refextract,
arxiv_author_list("authorlist2marcxml.xsl"),
]),
extract_journal_info,
classify_paper(
taxonomy="HEPont.rdf",
only_core_tags=False,
spires=True,
with_author_keywords=True,
),
filter_core_keywords,
guess_categories,
IF(is_experimental_paper, [
guess_experiments,
]),
guess_keywords,
# Predict action for a generic HEP paper based only on title
# and abstract.
guess_coreness, # ("arxiv_skip_astro_title_abstract.pickle)
# Check if we shall halt or auto-reject
# =====================================
# NOTE: User submissions are always relevant
IF_ELSE(is_record_relevant, [
halt_record(action="hep_approval"),
], [reject_record("Article automatically rejected"), stop_processing]),
IF_ELSE(is_record_accepted, [
IF(article_exists, [
IF_ELSE(is_submission, [
reject_record('Article was already found on INSPIRE'),
stop_processing,
reply_ticket(
template=
"literaturesuggest/tickets/user_rejected_exists.html",
context_factory=reply_ticket_context),
close_ticket(ticket_id_key="ticket_id"),
], [
halt_record(action="merge_approval"),
]),
]),
add_core,
add_note_entry,
filter_keywords,
user_pdf_get,
IF_ELSE(shall_push_remotely, [
IF_ELSE(article_exists, [
prepare_update_payload(extra_data_key="update_payload"),
send_robotupload(marcxml_processor=hep2marc,
mode="correct",
extra_data_key="update_payload"),
], [
send_robotupload(marcxml_processor=hep2marc,
mode="insert"),
])
], [store_record]),
IF(is_submission, [
IF(curation_ticket_needed, [
create_ticket(
template="literaturesuggest/tickets/curation_core.html",
queue="HEP_curation",
context_factory=curation_ticket_context,
ticket_id_key="curation_ticket_id")
]),
reply_ticket(
template="literaturesuggest/tickets/user_accepted.html",
context_factory=reply_ticket_context),
]),
], [
IF(is_submission,
[reply_ticket(context_factory=reply_ticket_context)])
]),
close_ticket(ticket_id_key="ticket_id")
]
update_ticket_context,
)
SEND_TO_LEGACY = [
send_robotupload(
mode="insert"
),
]
NOTIFY_ACCEPTED = [
reply_ticket(
template="authors/tickets/user_accepted.html",
context_factory=reply_ticket_context),
close_ticket(ticket_id_key="ticket_id"),
]
CLOSE_TICKET_IF_NEEDED = [
IF(curation_ticket_needed, [
create_ticket(
template="authors/tickets/curation_needed.html",
queue="AUTHORS_curation",
context_factory=curation_ticket_context,
ticket_id_key="curation_ticket_id"
),
]),
]
class AuthorNew(WorkflowBase):
"""Workflow for new author information."""
object_type = "Author New"
workflow = [
convert_data_to_model(),
create_marcxml_record(),
create_curator_ticket_new(template="authors/tickets/curator_new.html",
queue="Authors_add_user"),
reply_ticket(template="authors/tickets/user_new.html", keep_new=True),
halt_record_with_action(action="author_approval",
message="Accept submission?"),
IF_ELSE(shall_upload_record, [
IF(recreate_data,
[convert_data_to_model(),
create_marcxml_record()]),
send_robotupload(mode="insert"),
reply_ticket(template="authors/tickets/user_accepted.html"),
close_ticket(ticket_id_key="ticket_id"),
IF(curation_ticket_needed, [
create_curation_ticket(
template="authors/tickets/curation_needed.html",
queue="AUTHORS_curation",
ticket_id_key="curation_ticket_id"),
]),
], [
close_ticket(ticket_id_key="ticket_id"),
])
]
@staticmethod
def get_title(bwo):
"""Return title of object."""
id_user = bwo.id_user
try:
user_email = User.query.get(id_user).email
except AttributeError:
user_email = ''
return u"New Author by: {0}".format(user_email)
@staticmethod
def get_description(bwo):
"""Return description of object."""
return bwo.data.get("name", {}).get("preferred_name", "No name found")
@staticmethod
def formatter(bwo, **kwargs):
"""Return formatted data of object."""
of = kwargs.get("of", "hp")
xml = bwo.extra_data.get("marcxml")
id_user = bwo.id_user
try:
user_email = User.query.get(id_user).email
except AttributeError:
user_email = ''
ticket_id = bwo.extra_data.get("ticket_id")
ticket_url = "https://rt.inspirehep.net/Ticket/Display.html?id={}".format(
ticket_id)
if of == "xm":
return xml
else:
# FIXME add a template for the author display in the HP
return render_template("authors/workflows/authorupdate.html",
record=bwo.data,
user_email=user_email,
ticket_url=ticket_url,
comments=bwo.extra_data.get("comments"))
