matplotlib.use('Agg')
from commons.time_interval import TimeInterval
from commons.Timelist import TimeList
from instruments.matchup_manager import Matchup_Manager
import basins.OGS as OGS
from instruments import lovbio_float as bio_float
from commons.mask import Mask
from commons.utils import addsep
from datetime import timedelta
starttime=args.starttime
end__time=args.endtime
INPUTDIR=addsep(args.inputdir)
BASEDIR=addsep(args.basedir)
TI=TimeInterval(starttime,end__time,'%Y%m%d')
TI.end_time = TI.end_time + timedelta(1)
TheMask=Mask(args.maskfile)
Profilelist=bio_float.FloatSelector(None,TI,OGS.med)
TL = TimeList.fromfilenames(TI, INPUTDIR,"ave*.nc")
M = Matchup_Manager(Profilelist,TL,BASEDIR)
profilerscript = BASEDIR + 'jobProfiler.sh'
M.writefiles_for_profiling('VarDescriptor_valid_online.xml', profilerscript) # preparation of data for aveScan
M.dumpModelProfiles(profilerscript) # sequential launch of aveScan
M.getFloatMatchups(Profilelist,TheMask.zlevels,args.outdir)
