def test_aux_coord_fail_mixed_dims(self):
# Check behaviour with an aux-coord mapped over both interpolation and
# non-interpolation dims : not supported.
cube = self.test_cube
cube.add_aux_coord(AuxCoord([[111, 112, 113, 114],
[211, 212, 213, 214]],
long_name='aux_0x'),
(0, 2))
msg = ('Coord aux_0x at one x-y position has the shape.*'
'instead of being a single point')
with self.assertRaisesRegexp(ValueError, msg):
interpolate(cube, self.single_sample_point, method='nearest')
def test_single_point_same_cube(self):
# Check exact result matching for a single point.
cube = self.test_cube
result = interpolate(cube, self.single_sample_point, method='nearest')
# Check that the result is a single trajectory point, exactly equal to
# the expected part of the original data.
self.assertEqual(result.shape[-1], 1)
result = result[..., 0]
expected = cube[:, self.single_point_iy, self.single_point_ix]
self.assertEqual(result, expected)
def test_aux_coord_noninterpolation_dim(self):
# Check exact result with an aux-coord mapped to an uninterpolated dim.
cube = self.test_cube
cube.add_aux_coord(DimCoord([17, 19], long_name='aux0'), 0)
# The result cube should exactly equal a single source point.
result = interpolate(cube, self.single_sample_point, method='nearest')
self.assertEqual(result.shape[-1], 1)
result = result[..., 0]
expected = cube[:, self.single_point_iy, self.single_point_ix]
self.assertEqual(result, expected)
def test_aux_coord_one_interp_dim(self):
# Check exact result with an aux-coord over one interpolation dims.
cube = self.test_cube
cube.add_aux_coord(AuxCoord([11, 12, 13, 14], long_name='aux_x'),
2)
# The result cube should exactly equal a single source point.
result = interpolate(cube, self.single_sample_point, method='nearest')
self.assertEqual(result.shape[-1], 1)
result = result[..., 0]
expected = cube[:, self.single_point_iy, self.single_point_ix]
self.assertEqual(result, expected)
def test_metadata(self):
# Check exact result matching for a single point, with additional
# attributes and cell-methods.
cube = self.test_cube
cube.attributes['ODD_ATTR'] = 'string-value-example'
cube.add_cell_method(iris.coords.CellMethod('mean', 'area'))
result = interpolate(cube, self.single_sample_point, method='nearest')
# Check that the result is a single trajectory point, exactly equal to
# the expected part of the original data.
self.assertEqual(result.shape[-1], 1)
result = result[..., 0]
expected = cube[:, self.single_point_iy, self.single_point_ix]
self.assertEqual(result, expected)
def test_aux_coord_both_interp_dims(self):
# Check exact result with an aux-coord over both interpolation dims.
cube = self.test_cube
cube.add_aux_coord(
AuxCoord([[11, 12, 13, 14], [21, 22, 23, 24], [31, 32, 33, 34]],
long_name='aux_xy'), (1, 2))
# The result cube should exactly equal a single source point.
result = interpolate(cube, self.single_sample_point, method='nearest')
self.assertEqual(result.shape[-1], 1)
result = result[..., 0]
expected = cube[:, self.single_point_iy, self.single_point_ix]
self.assertEqual(result, expected)
def test_metadata(self):
# Check exact result matching for a single point, with additional
# attributes and cell-methods.
cube = self.test_cube
cube.attributes["ODD_ATTR"] = "string-value-example"
cube.add_cell_method(iris.coords.CellMethod("mean", "area"))
result = interpolate(cube, self.single_sample_point, method="nearest")
# Check that the result is a single trajectory point, exactly equal to
# the expected part of the original data.
self.assertEqual(result.shape[-1], 1)
result = result[..., 0]
expected = cube[:, self.single_point_iy, self.single_point_ix]
self.assertEqual(result, expected)
def test_multi_point_same_cube(self):
# Check an exact result for multiple points.
cube = self.test_cube
# Use latitude selection to recreate a whole row of the original cube.
sample_points = [('longitude', [-180, -90, 0, 90]),
('latitude', [0, 0, 0, 0])]
result = interpolate(cube, sample_points, method='nearest')
# The result should be identical to a single latitude section of the
# original, but with modified coords (latitude has 4 repeated zeros).
expected = cube[:, 1, :]
# Result 'longitude' is now an aux coord.
co_x = expected.coord('longitude')
expected.remove_coord(co_x)
expected.add_aux_coord(co_x, 1)
# Result 'latitude' is now an aux coord containing 4*[0].
expected.remove_coord('latitude')
co_y = AuxCoord([0, 0, 0, 0],
standard_name='latitude', units='degrees')
expected.add_aux_coord(co_y, 1)
self.assertEqual(result, expected)
def test_multi_point_same_cube(self):
# Check an exact result for multiple points.
cube = self.test_cube
# Use latitude selection to recreate a whole row of the original cube.
sample_points = [('longitude', [-180, -90, 0, 90]),
('latitude', [0, 0, 0, 0])]
result = interpolate(cube, sample_points, method='nearest')
# The result should be identical to a single latitude section of the
# original, but with modified coords (latitude has 4 repeated zeros).
expected = cube[:, 1, :]
# Result 'longitude' is now an aux coord.
co_x = expected.coord('longitude')
expected.remove_coord(co_x)
expected.add_aux_coord(co_x, 1)
# Result 'latitude' is now an aux coord containing 4*[0].
expected.remove_coord('latitude')
co_y = AuxCoord([0, 0, 0, 0],
standard_name='latitude',
units='degrees')
expected.add_aux_coord(co_y, 1)
self.assertEqual(result, expected)
def test_unknown_method(self):
cube = iris.tests.stock.simple_2d()
sample_point = [('x', 2.8)]
msg = 'Unhandled interpolation.*linekar'
with self.assertRaisesRegex(ValueError, msg):
interpolate(cube, sample_point, method="linekar")
def test_derived_coord(self):
cube = iris.tests.stock.realistic_4d()
sample_pts = [('altitude', [0, 10, 50])]
msg = "'altitude'.*derived coordinates are not allowed"
with self.assertRaisesRegex(ValueError, msg):
interpolate(cube, sample_pts, 'nearest')
# Create attribute constraint based on name of column
attConstraint = iris.AttributeConstraint(**{'Name':name})
# Load data into a cube
cube = iris.load_cube(workdir+'/'+filename, attConstraint)
#----------------------
# Option 1: Specify the trajectory by listing all the latitudes and
# longitudes along it
sample_points = [('latitude', [52, 54, 56, 58]),
('longitude', [-20, -15, -10, -5])]
# Extract the data at the trajectory points by linearly interpolating
# from the nearest points
interpolated_cube = trajectory.interpolate(cube, sample_points)
# Plot
# Choose the coordinates to be shown on the x and y-axis, these are passed to
# contourf as coords = [x-coord, y-coord]
altitude = interpolated_cube.coord('altitude')
latitude = interpolated_cube.coord('latitude')
cf = iplt.contourf(interpolated_cube, coords=[latitude, altitude])
plt.xlabel(latitude.name().title() + ' (' + str(latitude.units) + ')')
plt.ylabel(altitude.name().title() + ' (' + str(altitude.units) + ')')
plt.title(interpolated_cube.name() + ' (' + str(interpolated_cube.units) + ')')
cb = plt.colorbar(cf, orientation='vertical', shrink=0.7, format='%.1e')
plt.show()
def test_unknown_method(self):
cube = iris.tests.stock.simple_2d()
sample_point = [('x', 2.8)]
msg = 'Unhandled interpolation.*linekar'
with self.assertRaisesRegexp(ValueError, msg):
interpolate(cube, sample_point, method="linekar")
def test_derived_coord(self):
cube = iris.tests.stock.realistic_4d()
sample_pts = [('altitude', [0, 10, 50])]
msg = "'altitude'.*derived coordinates are not allowed"
with self.assertRaisesRegexp(ValueError, msg):
interpolate(cube, sample_pts, 'nearest')
def extract_vert_section(cube, pnts):
"""
Extract vertical slice of a cube
Assume cube's dims: (..., y, x)
"""
sample_count = pnts['sample_count']
zcoord = cube.coord(axis='z', dim_coords=True)
zspan = int(zcoord.points[0]), int(zcoord.points[-1])
if 'x' in pnts and 'y' in pnts:
# Grid indices (no interpolation needed)
if len(pnts['x']) == 2 and len(pnts['y']) == 2:
if ((pnts['x'] == pnts['x'][0]).all() and
not (pnts['y'] == pnts['y'][0]).all()):
# X const, Y varies
xslice = pnts['x'][0]
if pnts['y'][0] < pnts['y'][1]:
stride = 1
else:
stride = -1
yslice = slice(*pnts['y'], stride)
sect_info = dict(v=zcoord.name(),
h='y_axis_ind',
label='z{}-{}y{}-{}x{}'.format(*zspan,
*pnts['y'],
pnts['x'][0]))
elif ((pnts['y'] == pnts['y'][0]).all() and
not (pnts['x'] == pnts['x'][0]).all()):
# Y const, X varies
yslice = pnts['y'][0]
if pnts['x'][0] < pnts['x'][1]:
stride = 1
else:
stride = -1
xslice = slice(*pnts['x'], stride)
sect_info = dict(v=zcoord.name(),
h='x_axis_ind',
label='z{}-{}y{}x{}-{}'.format(*zspan,
pnts['y'][0],
*pnts['x']))
sect = cube[..., yslice, xslice]
else:
_msg = (f'Only 2 point pairs is allowed for grid indices option'
',\n{pnts} are given')
raise NotYetImplementedError(_msg)
elif 'lon' in pnts and 'lat' in pnts:
# Lon / lat coordinates
cs = cube.coord_system()
xcoord = cube.coord(axis='x', dim_coords=True)
ycoord = cube.coord(axis='y', dim_coords=True)
xp, yp = xcoord.points, ycoord.points
if (xp > 180).any():
xp = xp - 360
if isinstance(cs, (iris.coord_systems.RotatedGeogCS, )):
# Rotated coordinate system
# Use iris interpolation along a trajectory
nplat = cs.grid_north_pole_latitude
nplon = cs.grid_north_pole_longitude
waypoints = []
for ilon, ilat in zip(pnts['lon'], pnts['lat']):
waypoints.append({'longitude': ilon, 'latitude': ilat})
if sample_count == 'auto':
_x, _y = [], []
for ilon, ilat in zip(pnts['lon'], pnts['lat']):
_ilon, _ilat = rotate_pole(np.asarray(ilon),
np.asarray(ilat),
nplon, nplat)
_x.append(np.argmin(abs(xp - _ilon[0])))
_y.append(np.argmin(abs(yp - _ilat[0])))
sample_count = int(((np.diff(_x)**2 +
np.diff(_y)**2)**0.5).sum())
else:
assert isinstance(sample_count, int)
traj = trajectory.Trajectory(waypoints, sample_count=sample_count)
lon = np.array([d['longitude'] for d in traj.sampled_points])
lat = np.array([d['latitude'] for d in traj.sampled_points])
rlon, rlat = iris.analysis.cartography.rotate_pole(lon, lat,
nplon, nplat)
sampled_points = [(xcoord.name(), rlon),
(ycoord.name(), rlat)]
sect = trajectory.interpolate(cube, sampled_points)
_add_real_lonlat(sect, lon, lat)
latspan = pnts['lat'][0], pnts['lat'][-1]
lonspan = pnts['lon'][0], pnts['lon'][-1]
sect_info = dict(v=zcoord.name(),
h='index',
label='z{}-{}lat{}-{}lon{}-{}'.format(*zspan,
*latspan,
*lonspan))
elif isinstance(cs, (None, iris.coord_systems.GeogCS)):
# Rectangular grid
if len(pnts['lon']) == 2 and len(pnts['lat']) == 2:
if ((pnts['lon'] == pnts['lon'][0]).all() and
not (pnts['lat'] == pnts['lat'][0]).all()):
# X const, Y varies
xslice = np.argmin(abs(xp - pnts['lon'][0]))
yslice = slice(*[np.argmin(abs(yp - i))
for i in pnts['lat']])
elif ((pnts['lat'] == pnts['lat'][0]).all() and
not (pnts['lon'] == pnts['lon'][0]).all()):
# Y const, X varies
yslice = np.argmin(abs(yp - pnts['lat'][0]))
xslice = slice(*[np.argmin(abs(xp - i))
for i in pnts['lon']])
sect = cube[..., yslice, xslice]
sect_info = {} # TODO
else:
# Diagonal
raise NotYetImplementedError()
else:
raise NotYetImplementedError(f"Can't deal with "
"{cube.coord_system()}")
sect.attributes['sect_info'] = sect_info
sect.attributes['sect_info']['pnts'] = pnts
return sect
